Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1940 and DvMF_1941 overlap by 81 nucleotides DvMF_1941 and DvMF_1942 are separated by 418 nucleotides DvMF_1942 and DvMF_1943 are separated by 301 nucleotides
DvMF_1940: DvMF_1940 - Lytic transglycosylase catalytic (RefSeq), at 2,394,830 to 2,396,575
_1940
DvMF_1941: DvMF_1941 - hypothetical protein (RefSeq), at 2,396,495 to 2,396,872
_1941
DvMF_1942: DvMF_1942 - IMP cyclohydrolase (RefSeq), at 2,397,291 to 2,398,583
_1942
DvMF_1943: DvMF_1943 - ribonuclease II (RefSeq), at 2,398,885 to 2,401,092
_1943
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2396.308 kb on - strand, within DvMF_1940 at 2396.629 kb on - strand, within DvMF_1941 at 2396.730 kb on - strand, within DvMF_1941 at 2396.775 kb on - strand, within DvMF_1941 at 2396.960 kb on - strand at 2396.976 kb on + strand at 2397.367 kb on + strand at 2397.387 kb on + strand at 2397.443 kb on - strand, within DvMF_1942 at 2397.728 kb on + strand, within DvMF_1942 at 2397.736 kb on - strand, within DvMF_1942 at 2397.743 kb on - strand, within DvMF_1942 at 2397.854 kb on + strand, within DvMF_1942 at 2397.913 kb on + strand, within DvMF_1942 at 2397.923 kb on + strand, within DvMF_1942 at 2398.155 kb on - strand, within DvMF_1942 at 2398.235 kb on - strand, within DvMF_1942 at 2398.455 kb on + strand at 2398.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,396,308 - DvMF_1940 0.85 -0.6 2,396,629 - DvMF_1941 0.35 -0.7 2,396,730 - DvMF_1941 0.62 -0.7 2,396,775 - DvMF_1941 0.74 -0.5 2,396,960 - -0.4 2,396,976 + -0.5 2,397,367 + -2.0 2,397,387 + -3.4 2,397,443 - DvMF_1942 0.12 -4.8 2,397,728 + DvMF_1942 0.34 -3.0 2,397,736 - DvMF_1942 0.34 +0.1 2,397,743 - DvMF_1942 0.35 -4.0 2,397,854 + DvMF_1942 0.44 -5.0 2,397,913 + DvMF_1942 0.48 +0.7 2,397,923 + DvMF_1942 0.49 -4.0 2,398,155 - DvMF_1942 0.67 -2.7 2,398,235 - DvMF_1942 0.73 -0.9 2,398,455 + -5.2 2,398,826 - -0.3
Or see this region's nucleotide sequence