Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1847

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1846 and DvMF_1847 overlap by 8 nucleotidesDvMF_1847 and DvMF_1848 are separated by 8 nucleotides DvMF_1846: DvMF_1846 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 2,257,737 to 2,258,963 _1846 DvMF_1847: DvMF_1847 - polysaccharide deacetylase (RefSeq), at 2,258,956 to 2,259,897 _1847 DvMF_1848: DvMF_1848 - hypothetical protein (RefSeq), at 2,259,906 to 2,261,060 _1848 Position (kb) 2258 2259 2260Strain fitness (log2 ratio) -1 0 1at 2258.110 kb on + strand, within DvMF_1846at 2258.252 kb on - strand, within DvMF_1846at 2258.367 kb on - strand, within DvMF_1846at 2258.375 kb on + strand, within DvMF_1846at 2258.390 kb on + strand, within DvMF_1846at 2258.429 kb on + strand, within DvMF_1846at 2258.434 kb on + strand, within DvMF_1846at 2258.437 kb on - strand, within DvMF_1846at 2258.459 kb on - strand, within DvMF_1846at 2258.575 kb on + strand, within DvMF_1846at 2258.630 kb on - strand, within DvMF_1846at 2258.817 kb on - strand, within DvMF_1846at 2258.891 kb on + strandat 2259.039 kb on - strandat 2259.046 kb on - strandat 2259.345 kb on + strand, within DvMF_1847at 2259.348 kb on - strand, within DvMF_1847at 2259.628 kb on - strand, within DvMF_1847at 2259.714 kb on + strand, within DvMF_1847at 2259.757 kb on + strand, within DvMF_1847at 2259.803 kb on + strandat 2259.911 kb on + strandat 2259.947 kb on - strandat 2260.152 kb on + strand, within DvMF_1848at 2260.256 kb on + strand, within DvMF_1848at 2260.438 kb on - strand, within DvMF_1848at 2260.593 kb on + strand, within DvMF_1848at 2260.593 kb on + strand, within DvMF_1848at 2260.616 kb on + strand, within DvMF_1848at 2260.679 kb on - strand, within DvMF_1848at 2260.681 kb on + strand, within DvMF_1848at 2260.681 kb on + strand, within DvMF_1848at 2260.703 kb on + strand, within DvMF_1848at 2260.704 kb on - strand, within DvMF_1848at 2260.890 kb on - strand, within DvMF_1848

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,258,110 + DvMF_1846 0.30 -0.1
2,258,252 - DvMF_1846 0.42 -1.3
2,258,367 - DvMF_1846 0.51 -0.6
2,258,375 + DvMF_1846 0.52 -0.4
2,258,390 + DvMF_1846 0.53 -0.7
2,258,429 + DvMF_1846 0.56 -0.6
2,258,434 + DvMF_1846 0.57 -0.6
2,258,437 - DvMF_1846 0.57 -0.2
2,258,459 - DvMF_1846 0.59 -1.0
2,258,575 + DvMF_1846 0.68 -0.9
2,258,630 - DvMF_1846 0.73 -1.3
2,258,817 - DvMF_1846 0.88 -0.9
2,258,891 + -0.7
2,259,039 - -0.8
2,259,046 - -1.3
2,259,345 + DvMF_1847 0.41 -1.1
2,259,348 - DvMF_1847 0.42 -0.9
2,259,628 - DvMF_1847 0.71 -0.9
2,259,714 + DvMF_1847 0.80 -0.6
2,259,757 + DvMF_1847 0.85 -1.7
2,259,803 + -0.6
2,259,911 + -0.5
2,259,947 - -0.4
2,260,152 + DvMF_1848 0.21 -1.0
2,260,256 + DvMF_1848 0.30 -1.2
2,260,438 - DvMF_1848 0.46 -0.9
2,260,593 + DvMF_1848 0.59 -1.1
2,260,593 + DvMF_1848 0.59 -0.7
2,260,616 + DvMF_1848 0.61 -0.5
2,260,679 - DvMF_1848 0.67 -0.7
2,260,681 + DvMF_1848 0.67 -1.3
2,260,681 + DvMF_1848 0.67 -1.1
2,260,703 + DvMF_1848 0.69 -0.8
2,260,704 - DvMF_1848 0.69 -0.6
2,260,890 - DvMF_1848 0.85 -0.8

Or see this region's nucleotide sequence