Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1845

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1843 and DvMF_1844 are separated by 177 nucleotidesDvMF_1844 and DvMF_1845 overlap by 16 nucleotidesDvMF_1845 and DvMF_1846 overlap by 8 nucleotides DvMF_1843: DvMF_1843 - acetyltransferase (RefSeq), at 2,255,115 to 2,255,783 _1843 DvMF_1844: DvMF_1844 - acylneuraminate cytidylyltransferase (RefSeq), at 2,255,961 to 2,256,725 _1844 DvMF_1845: DvMF_1845 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,256,710 to 2,257,744 _1845 DvMF_1846: DvMF_1846 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 2,257,737 to 2,258,963 _1846 Position (kb) 2256 2257 2258Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2256.017 kb on - strandat 2256.125 kb on + strand, within DvMF_1844at 2256.130 kb on + strand, within DvMF_1844at 2256.142 kb on + strand, within DvMF_1844at 2256.822 kb on - strand, within DvMF_1845at 2256.953 kb on + strand, within DvMF_1845at 2256.998 kb on + strand, within DvMF_1845at 2257.050 kb on + strand, within DvMF_1845at 2257.068 kb on - strand, within DvMF_1845at 2257.190 kb on + strand, within DvMF_1845at 2257.229 kb on + strand, within DvMF_1845at 2257.463 kb on - strand, within DvMF_1845at 2257.510 kb on - strand, within DvMF_1845at 2257.510 kb on - strand, within DvMF_1845at 2257.556 kb on + strand, within DvMF_1845at 2257.598 kb on - strand, within DvMF_1845at 2257.601 kb on + strand, within DvMF_1845at 2257.601 kb on + strand, within DvMF_1845at 2257.609 kb on - strand, within DvMF_1845at 2257.790 kb on + strandat 2258.110 kb on + strand, within DvMF_1846at 2258.252 kb on - strand, within DvMF_1846at 2258.367 kb on - strand, within DvMF_1846at 2258.375 kb on + strand, within DvMF_1846at 2258.390 kb on + strand, within DvMF_1846at 2258.429 kb on + strand, within DvMF_1846at 2258.434 kb on + strand, within DvMF_1846at 2258.437 kb on - strand, within DvMF_1846at 2258.459 kb on - strand, within DvMF_1846at 2258.575 kb on + strand, within DvMF_1846at 2258.630 kb on - strand, within DvMF_1846

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,256,017 - -0.7
2,256,125 + DvMF_1844 0.21 +2.2
2,256,130 + DvMF_1844 0.22 -0.5
2,256,142 + DvMF_1844 0.24 -0.3
2,256,822 - DvMF_1845 0.11 -1.0
2,256,953 + DvMF_1845 0.23 -1.1
2,256,998 + DvMF_1845 0.28 +0.1
2,257,050 + DvMF_1845 0.33 -1.1
2,257,068 - DvMF_1845 0.35 -0.9
2,257,190 + DvMF_1845 0.46 -0.9
2,257,229 + DvMF_1845 0.50 -3.1
2,257,463 - DvMF_1845 0.73 -0.8
2,257,510 - DvMF_1845 0.77 -1.3
2,257,510 - DvMF_1845 0.77 -0.6
2,257,556 + DvMF_1845 0.82 -0.5
2,257,598 - DvMF_1845 0.86 -1.0
2,257,601 + DvMF_1845 0.86 -0.9
2,257,601 + DvMF_1845 0.86 -0.9
2,257,609 - DvMF_1845 0.87 -0.5
2,257,790 + -1.1
2,258,110 + DvMF_1846 0.30 -0.1
2,258,252 - DvMF_1846 0.42 -1.3
2,258,367 - DvMF_1846 0.51 -0.6
2,258,375 + DvMF_1846 0.52 -0.4
2,258,390 + DvMF_1846 0.53 -0.7
2,258,429 + DvMF_1846 0.56 -0.6
2,258,434 + DvMF_1846 0.57 -0.6
2,258,437 - DvMF_1846 0.57 -0.2
2,258,459 - DvMF_1846 0.59 -1.0
2,258,575 + DvMF_1846 0.68 -0.9
2,258,630 - DvMF_1846 0.73 -1.3

Or see this region's nucleotide sequence