Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1826 and DvMF_1827 are separated by 3 nucleotides DvMF_1827 and DvMF_1828 are separated by 1 nucleotides
DvMF_1826: DvMF_1826 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,228,497 to 2,229,498
_1826
DvMF_1827: DvMF_1827 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,229,502 to 2,230,422
_1827
DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401
_1828
Position (kb)
2229
2230
2231 Strain fitness (log2 ratio)
-1
0
1 at 2228.864 kb on - strand, within DvMF_1826 at 2228.891 kb on + strand, within DvMF_1826 at 2228.994 kb on - strand, within DvMF_1826 at 2229.176 kb on - strand, within DvMF_1826 at 2229.273 kb on + strand, within DvMF_1826 at 2229.385 kb on + strand, within DvMF_1826 at 2229.406 kb on - strand at 2229.665 kb on + strand, within DvMF_1827 at 2229.761 kb on - strand, within DvMF_1827 at 2229.962 kb on - strand, within DvMF_1827 at 2230.161 kb on - strand, within DvMF_1827 at 2230.328 kb on + strand, within DvMF_1827 at 2230.472 kb on - strand at 2230.607 kb on + strand, within DvMF_1828 at 2230.701 kb on - strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.727 kb on - strand, within DvMF_1828
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,228,864 - DvMF_1826 0.37 -0.0 2,228,891 + DvMF_1826 0.39 +0.2 2,228,994 - DvMF_1826 0.50 +0.1 2,229,176 - DvMF_1826 0.68 -0.1 2,229,273 + DvMF_1826 0.77 +0.0 2,229,385 + DvMF_1826 0.89 +0.1 2,229,406 - +0.0 2,229,665 + DvMF_1827 0.18 +0.6 2,229,761 - DvMF_1827 0.28 -0.0 2,229,962 - DvMF_1827 0.50 +0.1 2,230,161 - DvMF_1827 0.72 -0.1 2,230,328 + DvMF_1827 0.90 +0.1 2,230,472 - -0.2 2,230,607 + DvMF_1828 0.19 -0.3 2,230,701 - DvMF_1828 0.28 +0.3 2,230,719 + DvMF_1828 0.30 +0.3 2,230,719 + DvMF_1828 0.30 -1.4 2,230,719 + DvMF_1828 0.30 -0.0 2,230,727 - DvMF_1828 0.31 +0.3
Or see this region's nucleotide sequence