Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1791

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1790 and DvMF_1791 are separated by 228 nucleotidesDvMF_1791 and DvMF_1792 are separated by 0 nucleotides DvMF_1790: DvMF_1790 - CDP-diacylglycerol/serine O-phosphatidyltransferase (RefSeq), at 2,189,904 to 2,190,653 _1790 DvMF_1791: DvMF_1791 - 2-isopropylmalate synthase (RefSeq), at 2,190,882 to 2,192,426 _1791 DvMF_1792: DvMF_1792 - 3-isopropylmalate dehydratase large subunit (RefSeq), at 2,192,427 to 2,193,683 _1792 Position (kb) 2190 2191 2192 2193Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2190.647 kb on + strandat 2190.713 kb on + strandat 2190.860 kb on - strandat 2191.060 kb on - strand, within DvMF_1791at 2191.090 kb on + strand, within DvMF_1791at 2191.098 kb on - strand, within DvMF_1791at 2191.238 kb on - strand, within DvMF_1791at 2191.420 kb on - strand, within DvMF_1791at 2191.664 kb on - strand, within DvMF_1791at 2191.861 kb on - strand, within DvMF_1791at 2192.047 kb on + strand, within DvMF_1791at 2192.079 kb on + strand, within DvMF_1791at 2192.184 kb on + strand, within DvMF_1791at 2192.194 kb on - strand, within DvMF_1791at 2192.629 kb on - strand, within DvMF_1792at 2192.659 kb on + strand, within DvMF_1792at 2192.752 kb on + strand, within DvMF_1792at 2192.770 kb on - strand, within DvMF_1792at 2192.931 kb on + strand, within DvMF_1792at 2192.941 kb on - strand, within DvMF_1792at 2192.947 kb on + strand, within DvMF_1792at 2193.206 kb on + strand, within DvMF_1792at 2193.383 kb on + strand, within DvMF_1792

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,190,647 + -0.1
2,190,713 + -0.5
2,190,860 - -0.2
2,191,060 - DvMF_1791 0.12 -4.3
2,191,090 + DvMF_1791 0.13 -6.0
2,191,098 - DvMF_1791 0.14 -6.9
2,191,238 - DvMF_1791 0.23 -6.3
2,191,420 - DvMF_1791 0.35 -5.9
2,191,664 - DvMF_1791 0.51 -4.5
2,191,861 - DvMF_1791 0.63 -5.8
2,192,047 + DvMF_1791 0.75 -3.3
2,192,079 + DvMF_1791 0.77 -3.4
2,192,184 + DvMF_1791 0.84 -3.0
2,192,194 - DvMF_1791 0.85 -3.9
2,192,629 - DvMF_1792 0.16 -6.3
2,192,659 + DvMF_1792 0.18 -4.8
2,192,752 + DvMF_1792 0.26 -3.7
2,192,770 - DvMF_1792 0.27 -6.8
2,192,931 + DvMF_1792 0.40 -7.3
2,192,941 - DvMF_1792 0.41 -3.6
2,192,947 + DvMF_1792 0.41 -6.0
2,193,206 + DvMF_1792 0.62 -4.4
2,193,383 + DvMF_1792 0.76 -5.1

Or see this region's nucleotide sequence