Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1766

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1764 and DvMF_1765 are separated by 24 nucleotidesDvMF_1765 and DvMF_1766 are separated by 64 nucleotidesDvMF_1766 and DvMF_1767 are separated by 1 nucleotidesDvMF_1767 and DvMF_1768 overlap by 4 nucleotides DvMF_1764: DvMF_1764 - protein of unknown function DUF81 (RefSeq), at 2,160,934 to 2,161,911 _1764 DvMF_1765: DvMF_1765 - hypothetical protein (RefSeq), at 2,161,936 to 2,162,355 _1765 DvMF_1766: DvMF_1766 - sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family (RefSeq), at 2,162,420 to 2,164,123 _1766 DvMF_1767: DvMF_1767 - hypothetical protein (RefSeq), at 2,164,125 to 2,164,472 _1767 DvMF_1768: DvMF_1768 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,164,469 to 2,166,199 _1768 Position (kb) 2162 2163 2164 2165Strain fitness (log2 ratio) -2 -1 0 1at 2162.840 kb on + strand, within DvMF_1766at 2163.093 kb on + strand, within DvMF_1766at 2163.197 kb on + strand, within DvMF_1766at 2163.226 kb on - strand, within DvMF_1766at 2163.316 kb on + strand, within DvMF_1766at 2163.316 kb on + strand, within DvMF_1766at 2163.371 kb on + strand, within DvMF_1766at 2163.379 kb on - strand, within DvMF_1766at 2163.430 kb on - strand, within DvMF_1766at 2163.460 kb on + strand, within DvMF_1766at 2163.483 kb on + strand, within DvMF_1766at 2163.574 kb on - strand, within DvMF_1766at 2163.710 kb on + strand, within DvMF_1766at 2163.727 kb on + strand, within DvMF_1766at 2163.728 kb on - strand, within DvMF_1766at 2163.780 kb on + strand, within DvMF_1766at 2163.874 kb on + strand, within DvMF_1766at 2163.990 kb on - strandat 2164.125 kb on - strandat 2164.154 kb on - strandat 2164.342 kb on + strand, within DvMF_1767at 2164.423 kb on - strand, within DvMF_1767at 2164.651 kb on - strand, within DvMF_1768at 2164.790 kb on - strand, within DvMF_1768at 2164.942 kb on + strand, within DvMF_1768at 2164.950 kb on - strand, within DvMF_1768at 2164.950 kb on - strand, within DvMF_1768at 2164.950 kb on - strand, within DvMF_1768at 2165.009 kb on + strand, within DvMF_1768at 2165.080 kb on + strand, within DvMF_1768

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,162,840 + DvMF_1766 0.25 +0.6
2,163,093 + DvMF_1766 0.39 +0.5
2,163,197 + DvMF_1766 0.46 +0.5
2,163,226 - DvMF_1766 0.47 +0.6
2,163,316 + DvMF_1766 0.53 +0.1
2,163,316 + DvMF_1766 0.53 +0.3
2,163,371 + DvMF_1766 0.56 +1.0
2,163,379 - DvMF_1766 0.56 +0.6
2,163,430 - DvMF_1766 0.59 +0.5
2,163,460 + DvMF_1766 0.61 +0.8
2,163,483 + DvMF_1766 0.62 +0.7
2,163,574 - DvMF_1766 0.68 +0.8
2,163,710 + DvMF_1766 0.76 +0.4
2,163,727 + DvMF_1766 0.77 +0.8
2,163,728 - DvMF_1766 0.77 +0.6
2,163,780 + DvMF_1766 0.80 +0.6
2,163,874 + DvMF_1766 0.85 +0.7
2,163,990 - +0.3
2,164,125 - +0.3
2,164,154 - +1.2
2,164,342 + DvMF_1767 0.62 +0.3
2,164,423 - DvMF_1767 0.86 +0.4
2,164,651 - DvMF_1768 0.11 -2.5
2,164,790 - DvMF_1768 0.19 -0.6
2,164,942 + DvMF_1768 0.27 -0.2
2,164,950 - DvMF_1768 0.28 -1.0
2,164,950 - DvMF_1768 0.28 -0.3
2,164,950 - DvMF_1768 0.28 -0.8
2,165,009 + DvMF_1768 0.31 -0.6
2,165,080 + DvMF_1768 0.35 -0.9

Or see this region's nucleotide sequence