Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1763

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1762 and DvMF_R0049 are separated by 603 nucleotidesDvMF_R0049 and DvMF_1763 are separated by 86 nucleotidesDvMF_1763 and DvMF_1764 are separated by 249 nucleotides DvMF_1762: DvMF_1762 - riboflavin biosynthesis protein RibF (RefSeq), at 2,157,797 to 2,158,741 _1762 DvMF_R0049: DvMF_R0049 - tRNA-Leu (RefSeq), at 2,159,345 to 2,159,431 _R0049 DvMF_1763: DvMF_1763 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 2,159,518 to 2,160,684 _1763 DvMF_1764: DvMF_1764 - protein of unknown function DUF81 (RefSeq), at 2,160,934 to 2,161,911 _1764 Position (kb) 2159 2160 2161Strain fitness (log2 ratio) -2 -1 0 1 2at 2158.862 kb on - strandat 2159.045 kb on + strandat 2159.112 kb on + strandat 2159.136 kb on + strandat 2159.139 kb on - strandat 2159.139 kb on - strandat 2159.181 kb on + strandat 2159.188 kb on + strandat 2159.223 kb on + strandat 2159.416 kb on - strand, within DvMF_R0049at 2160.133 kb on - strand, within DvMF_1763at 2160.331 kb on + strand, within DvMF_1763at 2160.331 kb on + strand, within DvMF_1763at 2160.339 kb on - strand, within DvMF_1763at 2160.355 kb on + strand, within DvMF_1763at 2160.355 kb on + strand, within DvMF_1763at 2160.405 kb on - strand, within DvMF_1763

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,158,862 - -0.3
2,159,045 + -0.4
2,159,112 + -0.4
2,159,136 + -0.4
2,159,139 - -0.4
2,159,139 - -0.4
2,159,181 + -1.0
2,159,188 + +2.1
2,159,223 + +0.6
2,159,416 - DvMF_R0049 0.82 -0.2
2,160,133 - DvMF_1763 0.53 -0.4
2,160,331 + DvMF_1763 0.70 -1.3
2,160,331 + DvMF_1763 0.70 -1.3
2,160,339 - DvMF_1763 0.70 -2.4
2,160,355 + DvMF_1763 0.72 -1.7
2,160,355 + DvMF_1763 0.72 -1.4
2,160,405 - DvMF_1763 0.76 -1.3

Or see this region's nucleotide sequence