Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1744

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1742 and DvMF_1743 overlap by 4 nucleotidesDvMF_1743 and DvMF_1744 overlap by 8 nucleotidesDvMF_1744 and DvMF_1745 are separated by 195 nucleotidesDvMF_1745 and DvMF_1746 overlap by 20 nucleotides DvMF_1742: DvMF_1742 - Phosphoribosylanthranilate isomerase (RefSeq), at 2,129,558 to 2,130,235 _1742 DvMF_1743: DvMF_1743 - Indole-3-glycerol-phosphate synthase (RefSeq), at 2,130,232 to 2,131,197 _1743 DvMF_1744: DvMF_1744 - anthranilate phosphoribosyltransferase (RefSeq), at 2,131,190 to 2,132,206 _1744 DvMF_1745: DvMF_1745 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 2,132,402 to 2,132,980 _1745 DvMF_1746: DvMF_1746 - Anthranilate synthase (RefSeq), at 2,132,961 to 2,134,523 _1746 Position (kb) 2131 2132 2133Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2130.405 kb on - strand, within DvMF_1743at 2130.452 kb on - strand, within DvMF_1743at 2130.675 kb on + strand, within DvMF_1743at 2130.840 kb on + strand, within DvMF_1743at 2130.892 kb on + strand, within DvMF_1743at 2130.909 kb on + strand, within DvMF_1743at 2131.049 kb on + strand, within DvMF_1743at 2131.261 kb on + strandat 2131.283 kb on + strandat 2131.283 kb on + strandat 2131.291 kb on - strandat 2131.338 kb on + strand, within DvMF_1744at 2131.496 kb on - strand, within DvMF_1744at 2131.611 kb on - strand, within DvMF_1744at 2131.828 kb on - strand, within DvMF_1744at 2131.897 kb on - strand, within DvMF_1744at 2132.406 kb on - strandat 2132.406 kb on - strandat 2132.472 kb on + strand, within DvMF_1745at 2132.505 kb on + strand, within DvMF_1745at 2132.505 kb on + strand, within DvMF_1745at 2132.513 kb on - strand, within DvMF_1745at 2132.513 kb on - strand, within DvMF_1745at 2132.697 kb on - strand, within DvMF_1745at 2132.740 kb on + strand, within DvMF_1745at 2132.746 kb on + strand, within DvMF_1745at 2132.754 kb on - strand, within DvMF_1745at 2132.821 kb on + strand, within DvMF_1745at 2133.156 kb on + strand, within DvMF_1746at 2133.198 kb on + strand, within DvMF_1746

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,130,405 - DvMF_1743 0.18 -0.9
2,130,452 - DvMF_1743 0.23 -3.0
2,130,675 + DvMF_1743 0.46 -7.1
2,130,840 + DvMF_1743 0.63 -5.4
2,130,892 + DvMF_1743 0.68 -3.8
2,130,909 + DvMF_1743 0.70 -5.0
2,131,049 + DvMF_1743 0.85 -5.8
2,131,261 + -4.8
2,131,283 + -4.6
2,131,283 + -6.6
2,131,291 - -5.6
2,131,338 + DvMF_1744 0.15 -5.7
2,131,496 - DvMF_1744 0.30 -8.4
2,131,611 - DvMF_1744 0.41 -5.6
2,131,828 - DvMF_1744 0.63 -3.7
2,131,897 - DvMF_1744 0.70 -7.6
2,132,406 - -0.6
2,132,406 - -0.1
2,132,472 + DvMF_1745 0.12 -2.1
2,132,505 + DvMF_1745 0.18 -1.8
2,132,505 + DvMF_1745 0.18 -1.0
2,132,513 - DvMF_1745 0.19 -1.5
2,132,513 - DvMF_1745 0.19 -2.0
2,132,697 - DvMF_1745 0.51 -3.2
2,132,740 + DvMF_1745 0.58 -1.8
2,132,746 + DvMF_1745 0.59 -1.8
2,132,754 - DvMF_1745 0.61 -1.0
2,132,821 + DvMF_1745 0.72 -1.8
2,133,156 + DvMF_1746 0.12 -6.9
2,133,198 + DvMF_1746 0.15 -5.4

Or see this region's nucleotide sequence