Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1698

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1697 and DvMF_1698 are separated by 303 nucleotidesDvMF_1698 and DvMF_1699 are separated by 319 nucleotides DvMF_1697: DvMF_1697 - hypothetical protein (RefSeq), at 2,068,559 to 2,068,888 _1697 DvMF_1698: DvMF_1698 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,069,192 to 2,072,083 _1698 DvMF_1699: DvMF_1699 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (RefSeq), at 2,072,403 to 2,073,062 _1699 Position (kb) 2069 2070 2071 2072 2073Strain fitness (log2 ratio) -1 0 1at 2068.219 kb on + strandat 2068.220 kb on + strandat 2068.220 kb on + strandat 2068.238 kb on - strandat 2068.240 kb on + strandat 2068.240 kb on + strandat 2068.248 kb on - strandat 2068.412 kb on - strandat 2068.492 kb on + strandat 2068.674 kb on + strand, within DvMF_1697at 2068.674 kb on + strand, within DvMF_1697at 2068.801 kb on - strand, within DvMF_1697at 2068.834 kb on + strand, within DvMF_1697at 2068.849 kb on - strand, within DvMF_1697at 2069.092 kb on + strandat 2069.254 kb on + strandat 2069.262 kb on - strandat 2069.444 kb on - strandat 2069.508 kb on + strand, within DvMF_1698at 2069.632 kb on - strand, within DvMF_1698at 2069.757 kb on - strand, within DvMF_1698at 2069.810 kb on + strand, within DvMF_1698at 2069.818 kb on - strand, within DvMF_1698at 2070.399 kb on + strand, within DvMF_1698at 2070.423 kb on + strand, within DvMF_1698at 2070.616 kb on - strand, within DvMF_1698at 2070.657 kb on - strand, within DvMF_1698at 2070.774 kb on - strand, within DvMF_1698at 2070.909 kb on - strand, within DvMF_1698at 2070.946 kb on + strand, within DvMF_1698at 2071.171 kb on - strand, within DvMF_1698at 2071.416 kb on + strand, within DvMF_1698at 2071.424 kb on - strand, within DvMF_1698at 2071.545 kb on - strand, within DvMF_1698at 2071.576 kb on - strand, within DvMF_1698at 2071.822 kb on - strandat 2072.038 kb on - strandat 2072.077 kb on + strandat 2072.148 kb on + strandat 2072.201 kb on - strandat 2072.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,068,219 + -0.1
2,068,220 + +0.6
2,068,220 + -0.4
2,068,238 - -0.4
2,068,240 + -0.6
2,068,240 + -0.3
2,068,248 - +0.1
2,068,412 - -0.6
2,068,492 + -0.8
2,068,674 + DvMF_1697 0.35 +1.1
2,068,674 + DvMF_1697 0.35 -0.1
2,068,801 - DvMF_1697 0.73 -0.4
2,068,834 + DvMF_1697 0.83 -0.1
2,068,849 - DvMF_1697 0.88 -0.4
2,069,092 + -0.3
2,069,254 + -0.3
2,069,262 - -0.1
2,069,444 - +0.6
2,069,508 + DvMF_1698 0.11 -0.5
2,069,632 - DvMF_1698 0.15 -0.0
2,069,757 - DvMF_1698 0.20 -0.3
2,069,810 + DvMF_1698 0.21 -0.2
2,069,818 - DvMF_1698 0.22 +0.1
2,070,399 + DvMF_1698 0.42 -0.3
2,070,423 + DvMF_1698 0.43 -0.5
2,070,616 - DvMF_1698 0.49 -0.0
2,070,657 - DvMF_1698 0.51 +0.4
2,070,774 - DvMF_1698 0.55 +1.0
2,070,909 - DvMF_1698 0.59 -0.2
2,070,946 + DvMF_1698 0.61 -0.3
2,071,171 - DvMF_1698 0.68 -0.2
2,071,416 + DvMF_1698 0.77 -0.2
2,071,424 - DvMF_1698 0.77 -0.1
2,071,545 - DvMF_1698 0.81 -0.4
2,071,576 - DvMF_1698 0.82 -0.2
2,071,822 - -0.8
2,072,038 - -0.3
2,072,077 + -0.4
2,072,148 + -0.4
2,072,201 - -0.4
2,072,409 - -0.3

Or see this region's nucleotide sequence