Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1609

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1608 and DvMF_1609 are separated by 112 nucleotidesDvMF_1609 and DvMF_1610 are separated by 83 nucleotidesDvMF_1610 and DvMF_1611 are separated by 4 nucleotides DvMF_1608: DvMF_1608 - histidine kinase (RefSeq), at 1,980,187 to 1,981,884 _1608 DvMF_1609: DvMF_1609 - cytoplasmic chaperone TorD family protein (RefSeq), at 1,981,997 to 1,982,851 _1609 DvMF_1610: DvMF_1610 - anaerobic dimethyl sulfoxide reductase subunit C (RefSeq), at 1,982,935 to 1,983,810 _1610 DvMF_1611: DvMF_1611 - dimethylsulfoxide reductase, chain B (RefSeq), at 1,983,815 to 1,984,432 _1611 Position (kb) 1981 1982 1983Strain fitness (log2 ratio) -1 0 1at 1981.442 kb on + strand, within DvMF_1608at 1981.487 kb on + strand, within DvMF_1608at 1981.540 kb on + strand, within DvMF_1608at 1981.649 kb on + strand, within DvMF_1608at 1981.688 kb on + strand, within DvMF_1608at 1981.838 kb on + strandat 1981.962 kb on + strandat 1982.168 kb on + strand, within DvMF_1609at 1982.277 kb on - strand, within DvMF_1609at 1982.750 kb on + strand, within DvMF_1609at 1982.866 kb on - strandat 1982.916 kb on + strandat 1982.958 kb on + strandat 1983.020 kb on + strandat 1983.168 kb on + strand, within DvMF_1610at 1983.246 kb on - strand, within DvMF_1610at 1983.253 kb on - strand, within DvMF_1610at 1983.377 kb on + strand, within DvMF_1610at 1983.470 kb on + strand, within DvMF_1610at 1983.588 kb on - strand, within DvMF_1610

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,981,442 + DvMF_1608 0.74 -0.6
1,981,487 + DvMF_1608 0.77 -0.3
1,981,540 + DvMF_1608 0.80 -0.2
1,981,649 + DvMF_1608 0.86 -0.1
1,981,688 + DvMF_1608 0.88 -0.3
1,981,838 + +0.5
1,981,962 + -0.3
1,982,168 + DvMF_1609 0.20 -0.3
1,982,277 - DvMF_1609 0.33 -1.4
1,982,750 + DvMF_1609 0.88 -0.7
1,982,866 - -0.1
1,982,916 + -0.2
1,982,958 + +0.1
1,983,020 + -0.2
1,983,168 + DvMF_1610 0.27 -0.3
1,983,246 - DvMF_1610 0.36 -0.3
1,983,253 - DvMF_1610 0.36 -0.1
1,983,377 + DvMF_1610 0.50 -0.2
1,983,470 + DvMF_1610 0.61 -0.7
1,983,588 - DvMF_1610 0.75 -0.3

Or see this region's nucleotide sequence