Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1572

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1571 and DvMF_1572 are separated by 302 nucleotidesDvMF_1572 and DvMF_1573 are separated by 169 nucleotides DvMF_1571: DvMF_1571 - extracellular solute-binding protein family 3 (RefSeq), at 1,937,297 to 1,938,046 _1571 DvMF_1572: DvMF_1572 - flavin reductase domain protein FMN-binding (RefSeq), at 1,938,349 to 1,938,921 _1572 DvMF_1573: DvMF_1573 - Undecaprenyl-phosphate galactose phosphotransferase, WbaP (RefSeq), at 1,939,091 to 1,940,503 _1573 Position (kb) 1938 1939Strain fitness (log2 ratio) -1 0 1 2at 1937.364 kb on - strandat 1937.457 kb on + strand, within DvMF_1571at 1937.494 kb on + strand, within DvMF_1571at 1937.569 kb on + strand, within DvMF_1571at 1937.584 kb on - strand, within DvMF_1571at 1937.633 kb on - strand, within DvMF_1571at 1937.673 kb on + strand, within DvMF_1571at 1937.682 kb on + strand, within DvMF_1571at 1937.918 kb on - strand, within DvMF_1571at 1938.250 kb on - strandat 1938.263 kb on - strandat 1938.530 kb on - strand, within DvMF_1572at 1938.646 kb on - strand, within DvMF_1572at 1938.917 kb on + strandat 1939.047 kb on + strandat 1939.143 kb on - strandat 1939.278 kb on - strand, within DvMF_1573at 1939.709 kb on + strand, within DvMF_1573at 1939.717 kb on - strand, within DvMF_1573at 1939.774 kb on + strand, within DvMF_1573

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,937,364 - -0.5
1,937,457 + DvMF_1571 0.21 -0.3
1,937,494 + DvMF_1571 0.26 -0.4
1,937,569 + DvMF_1571 0.36 -0.1
1,937,584 - DvMF_1571 0.38 -0.4
1,937,633 - DvMF_1571 0.45 -1.1
1,937,673 + DvMF_1571 0.50 -0.6
1,937,682 + DvMF_1571 0.51 -0.5
1,937,918 - DvMF_1571 0.83 -0.2
1,938,250 - -0.6
1,938,263 - -0.2
1,938,530 - DvMF_1572 0.32 +2.0
1,938,646 - DvMF_1572 0.52 -0.6
1,938,917 + -0.5
1,939,047 + -0.2
1,939,143 - -0.3
1,939,278 - DvMF_1573 0.13 +1.2
1,939,709 + DvMF_1573 0.44 -0.1
1,939,717 - DvMF_1573 0.44 -0.0
1,939,774 + DvMF_1573 0.48 +0.2

Or see this region's nucleotide sequence