Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1473

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1471 and DvMF_1472 are separated by 459 nucleotidesDvMF_1472 and DvMF_1473 are separated by 147 nucleotidesDvMF_1473 and DvMF_1474 are separated by 726 nucleotides DvMF_1471: DvMF_1471 - hypothetical protein (RefSeq), at 1,802,483 to 1,803,349 _1471 DvMF_1472: DvMF_1472 - hypothetical protein (RefSeq), at 1,803,809 to 1,804,150 _1472 DvMF_1473: DvMF_1473 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 1,804,298 to 1,806,412 _1473 DvMF_1474: DvMF_1474 - flagellin domain protein (RefSeq), at 1,807,139 to 1,807,966 _1474 Position (kb) 1804 1805 1806 1807Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1804.091 kb on + strand, within DvMF_1472at 1804.196 kb on + strandat 1804.226 kb on - strandat 1804.274 kb on - strandat 1804.465 kb on - strandat 1804.914 kb on + strand, within DvMF_1473at 1805.175 kb on + strand, within DvMF_1473at 1805.185 kb on + strand, within DvMF_1473at 1805.194 kb on - strand, within DvMF_1473at 1805.361 kb on + strand, within DvMF_1473at 1805.450 kb on + strand, within DvMF_1473at 1805.911 kb on + strand, within DvMF_1473at 1806.291 kb on + strandat 1806.349 kb on + strandat 1806.674 kb on - strandat 1806.837 kb on - strandat 1807.069 kb on + strandat 1807.262 kb on - strand, within DvMF_1474

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,804,091 + DvMF_1472 0.82 -2.4
1,804,196 + -0.3
1,804,226 - -0.2
1,804,274 - +0.4
1,804,465 - -2.0
1,804,914 + DvMF_1473 0.29 -2.1
1,805,175 + DvMF_1473 0.41 -2.3
1,805,185 + DvMF_1473 0.42 -1.8
1,805,194 - DvMF_1473 0.42 -4.1
1,805,361 + DvMF_1473 0.50 -2.9
1,805,450 + DvMF_1473 0.54 -2.1
1,805,911 + DvMF_1473 0.76 -2.1
1,806,291 + -1.5
1,806,349 + -2.2
1,806,674 - -1.1
1,806,837 - -0.2
1,807,069 + +0.1
1,807,262 - DvMF_1474 0.15 +0.3

Or see this region's nucleotide sequence