Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1295

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1294 and DvMF_1295 are separated by 883 nucleotidesDvMF_1295 and DvMF_1296 are separated by 178 nucleotidesDvMF_1296 and DvMF_1297 are separated by 47 nucleotidesDvMF_1297 and DvMF_1298 are separated by 57 nucleotides DvMF_1294: DvMF_1294 - hypothetical protein (RefSeq), at 1,583,890 to 1,584,360 _1294 DvMF_1295: DvMF_1295 - hypothetical protein (RefSeq), at 1,585,244 to 1,586,284 _1295 DvMF_1296: DvMF_1296 - hypothetical protein (RefSeq), at 1,586,463 to 1,586,819 _1296 DvMF_1297: DvMF_1297 - hypothetical protein (RefSeq), at 1,586,867 to 1,587,004 _1297 DvMF_1298: DvMF_1298 - phage tail tape measure protein, TP901 family (RefSeq), at 1,587,062 to 1,589,407 _1298 Position (kb) 1585 1586 1587Strain fitness (log2 ratio) -1 0 1at 1585.764 kb on + strand, within DvMF_1295at 1586.474 kb on + strandat 1586.482 kb on - strandat 1586.561 kb on + strand, within DvMF_1296at 1586.569 kb on - strand, within DvMF_1296at 1586.569 kb on - strand, within DvMF_1296at 1586.600 kb on + strand, within DvMF_1296at 1586.668 kb on + strand, within DvMF_1296at 1586.726 kb on + strand, within DvMF_1296at 1586.783 kb on + strand, within DvMF_1296at 1586.783 kb on + strand, within DvMF_1296at 1586.791 kb on - strandat 1586.857 kb on + strandat 1586.968 kb on - strand, within DvMF_1297at 1587.146 kb on - strandat 1587.242 kb on + strandat 1587.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,585,764 + DvMF_1295 0.50 +0.2
1,586,474 + -0.2
1,586,482 - +0.2
1,586,561 + DvMF_1296 0.27 -0.4
1,586,569 - DvMF_1296 0.30 -0.1
1,586,569 - DvMF_1296 0.30 -0.7
1,586,600 + DvMF_1296 0.38 -0.4
1,586,668 + DvMF_1296 0.57 -0.1
1,586,726 + DvMF_1296 0.74 -0.1
1,586,783 + DvMF_1296 0.90 -0.1
1,586,783 + DvMF_1296 0.90 -0.4
1,586,791 - -0.3
1,586,857 + +0.3
1,586,968 - DvMF_1297 0.73 -0.5
1,587,146 - -1.3
1,587,242 + -0.6
1,587,255 - +0.4

Or see this region's nucleotide sequence