Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1276 and DvMF_1277 overlap by 1 nucleotides DvMF_1277 and DvMF_1278 overlap by 47 nucleotides DvMF_1278 and DvMF_1279 overlap by 4 nucleotides DvMF_1279 and DvMF_1280 overlap by 4 nucleotides DvMF_1280 and DvMF_1281 are separated by 24 nucleotides DvMF_1281 and DvMF_1282 are separated by 129 nucleotides
DvMF_1276: DvMF_1276 - Lytic transglycosylase catalytic (RefSeq), at 1,568,472 to 1,569,143
_1276
DvMF_1277: DvMF_1277 - hypothetical protein (RefSeq), at 1,569,143 to 1,569,562
_1277
DvMF_1278: DvMF_1278 - hypothetical protein (RefSeq), at 1,569,516 to 1,569,797
_1278
DvMF_1279: DvMF_1279 - hypothetical protein (RefSeq), at 1,569,794 to 1,570,288
_1279
DvMF_1280: DvMF_1280 - hypothetical protein (RefSeq), at 1,570,285 to 1,570,527
_1280
DvMF_1281: DvMF_1281 - hypothetical protein (RefSeq), at 1,570,552 to 1,571,151
_1281
DvMF_1282: DvMF_1282 - portal protein, putative (RefSeq), at 1,571,281 to 1,572,762
_1282
Position (kb) 1569
1570
1571 Strain fitness (log2 ratio) -1
0
1 at 1568.804 kb on + strand, within DvMF_1276 at 1568.976 kb on - strand, within DvMF_1276 at 1569.083 kb on + strand at 1569.260 kb on - strand, within DvMF_1277 at 1569.308 kb on + strand, within DvMF_1277 at 1569.374 kb on - strand, within DvMF_1277 at 1569.624 kb on - strand, within DvMF_1278 at 1569.643 kb on + strand, within DvMF_1278 at 1569.736 kb on + strand, within DvMF_1278 at 1569.953 kb on - strand, within DvMF_1279 at 1569.964 kb on + strand, within DvMF_1279 at 1570.535 kb on - strand at 1570.626 kb on - strand, within DvMF_1281 at 1570.747 kb on + strand, within DvMF_1281 at 1570.845 kb on + strand, within DvMF_1281 at 1571.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,568,804 + DvMF_1276 0.49 +0.4 1,568,976 - DvMF_1276 0.75 +0.5 1,569,083 + -0.5 1,569,260 - DvMF_1277 0.28 -0.3 1,569,308 + DvMF_1277 0.39 +0.4 1,569,374 - DvMF_1277 0.55 -0.0 1,569,624 - DvMF_1278 0.38 +0.6 1,569,643 + DvMF_1278 0.45 -0.2 1,569,736 + DvMF_1278 0.78 +0.3 1,569,953 - DvMF_1279 0.32 +0.5 1,569,964 + DvMF_1279 0.34 +0.5 1,570,535 - -1.0 1,570,626 - DvMF_1281 0.12 -0.6 1,570,747 + DvMF_1281 0.33 -0.7 1,570,845 + DvMF_1281 0.49 -0.4 1,571,117 + -0.6
Or see this region's nucleotide sequence