Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1174 and DvMF_1175 overlap by 4 nucleotides DvMF_1175 and DvMF_1176 overlap by 4 nucleotides DvMF_1176 and DvMF_1177 overlap by 20 nucleotides
DvMF_1174: DvMF_1174 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,450,710 to 1,452,059
_1174
DvMF_1175: DvMF_1175 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit (RefSeq), at 1,452,056 to 1,453,480
_1175
DvMF_1176: DvMF_1176 - extracellular solute-binding protein family 3 (RefSeq), at 1,453,477 to 1,454,415
_1176
DvMF_1177: DvMF_1177 - precorrin-4 C11-methyltransferase (RefSeq), at 1,454,396 to 1,455,313
_1177
Position (kb)
1452
1453
1454 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1451.337 kb on - strand, within DvMF_1174 at 1451.614 kb on + strand, within DvMF_1174 at 1451.646 kb on - strand, within DvMF_1174 at 1451.717 kb on - strand, within DvMF_1174 at 1451.907 kb on - strand, within DvMF_1174 at 1453.053 kb on + strand, within DvMF_1175 at 1453.216 kb on - strand, within DvMF_1175 at 1453.300 kb on - strand, within DvMF_1175 at 1453.682 kb on + strand, within DvMF_1176 at 1453.825 kb on + strand, within DvMF_1176 at 1453.838 kb on + strand, within DvMF_1176 at 1453.862 kb on + strand, within DvMF_1176 at 1453.890 kb on - strand, within DvMF_1176 at 1454.106 kb on - strand, within DvMF_1176 at 1454.148 kb on - strand, within DvMF_1176 at 1454.251 kb on + strand, within DvMF_1176 at 1454.287 kb on - strand, within DvMF_1176 at 1454.388 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,451,337 - DvMF_1174 0.46 -0.9 1,451,614 + DvMF_1174 0.67 -0.5 1,451,646 - DvMF_1174 0.69 -1.8 1,451,717 - DvMF_1174 0.75 -0.3 1,451,907 - DvMF_1174 0.89 -1.2 1,453,053 + DvMF_1175 0.70 -2.8 1,453,216 - DvMF_1175 0.81 -0.4 1,453,300 - DvMF_1175 0.87 +0.0 1,453,682 + DvMF_1176 0.22 -0.2 1,453,825 + DvMF_1176 0.37 -0.7 1,453,838 + DvMF_1176 0.38 +0.1 1,453,862 + DvMF_1176 0.41 -0.0 1,453,890 - DvMF_1176 0.44 -0.5 1,454,106 - DvMF_1176 0.67 -0.5 1,454,148 - DvMF_1176 0.71 -0.5 1,454,251 + DvMF_1176 0.82 -0.5 1,454,287 - DvMF_1176 0.86 -0.3 1,454,388 + -0.5
Or see this region's nucleotide sequence