Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1157 and DvMF_1158 are separated by 131 nucleotides DvMF_1158 and DvMF_1159 overlap by 1 nucleotides
DvMF_1157: DvMF_1157 - putative PAS/PAC sensor protein (RefSeq), at 1,420,444 to 1,422,615
_1157
DvMF_1158: DvMF_1158 - transglutaminase family protein cysteine peptidase BTLCP (RefSeq), at 1,422,747 to 1,424,039
_1158
DvMF_1159: DvMF_1159 - type I secretion membrane fusion protein, HlyD family (RefSeq), at 1,424,039 to 1,425,439
_1159
Position (kb)
1422
1423
1424
1425 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1421.758 kb on + strand, within DvMF_1157 at 1421.879 kb on + strand, within DvMF_1157 at 1421.948 kb on + strand, within DvMF_1157 at 1421.948 kb on + strand, within DvMF_1157 at 1421.967 kb on - strand, within DvMF_1157 at 1422.276 kb on + strand, within DvMF_1157 at 1422.284 kb on - strand, within DvMF_1157 at 1422.353 kb on + strand, within DvMF_1157 at 1422.366 kb on - strand, within DvMF_1157 at 1422.461 kb on + strand at 1422.613 kb on + strand at 1422.958 kb on - strand, within DvMF_1158 at 1423.188 kb on + strand, within DvMF_1158 at 1423.355 kb on - strand, within DvMF_1158 at 1423.601 kb on + strand, within DvMF_1158 at 1424.093 kb on + strand at 1424.233 kb on + strand, within DvMF_1159 at 1424.294 kb on + strand, within DvMF_1159 at 1424.306 kb on + strand, within DvMF_1159 at 1424.488 kb on + strand, within DvMF_1159 at 1424.488 kb on + strand, within DvMF_1159 at 1424.496 kb on - strand, within DvMF_1159 at 1424.701 kb on + strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.709 kb on - strand, within DvMF_1159 at 1424.768 kb on - strand, within DvMF_1159
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,421,758 + DvMF_1157 0.60 +0.8 1,421,879 + DvMF_1157 0.66 +0.8 1,421,948 + DvMF_1157 0.69 +0.6 1,421,948 + DvMF_1157 0.69 +1.2 1,421,967 - DvMF_1157 0.70 +0.9 1,422,276 + DvMF_1157 0.84 +0.7 1,422,284 - DvMF_1157 0.85 +2.6 1,422,353 + DvMF_1157 0.88 +0.7 1,422,366 - DvMF_1157 0.88 +0.7 1,422,461 + +1.3 1,422,613 + +0.3 1,422,958 - DvMF_1158 0.16 -0.7 1,423,188 + DvMF_1158 0.34 -1.4 1,423,355 - DvMF_1158 0.47 -2.9 1,423,601 + DvMF_1158 0.66 -1.4 1,424,093 + +0.6 1,424,233 + DvMF_1159 0.14 +0.8 1,424,294 + DvMF_1159 0.18 +1.0 1,424,306 + DvMF_1159 0.19 +0.9 1,424,488 + DvMF_1159 0.32 +0.9 1,424,488 + DvMF_1159 0.32 +0.8 1,424,496 - DvMF_1159 0.33 +0.9 1,424,701 + DvMF_1159 0.47 +1.0 1,424,709 - DvMF_1159 0.48 +1.0 1,424,709 - DvMF_1159 0.48 +0.9 1,424,709 - DvMF_1159 0.48 +1.1 1,424,768 - DvMF_1159 0.52 +0.9
Or see this region's nucleotide sequence