Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1157

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1156 and DvMF_1157 are separated by 169 nucleotidesDvMF_1157 and DvMF_1158 are separated by 131 nucleotides DvMF_1156: DvMF_1156 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,417,854 to 1,420,274 _1156 DvMF_1157: DvMF_1157 - putative PAS/PAC sensor protein (RefSeq), at 1,420,444 to 1,422,615 _1157 DvMF_1158: DvMF_1158 - transglutaminase family protein cysteine peptidase BTLCP (RefSeq), at 1,422,747 to 1,424,039 _1158 Position (kb) 1420 1421 1422 1423Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1419.457 kb on + strand, within DvMF_1156at 1419.564 kb on + strand, within DvMF_1156at 1419.591 kb on - strand, within DvMF_1156at 1420.165 kb on - strandat 1420.359 kb on - strandat 1420.478 kb on + strandat 1420.880 kb on - strand, within DvMF_1157at 1420.893 kb on + strand, within DvMF_1157at 1421.037 kb on + strand, within DvMF_1157at 1421.052 kb on - strand, within DvMF_1157at 1421.073 kb on - strand, within DvMF_1157at 1421.078 kb on + strand, within DvMF_1157at 1421.286 kb on - strand, within DvMF_1157at 1421.286 kb on - strand, within DvMF_1157at 1421.467 kb on + strand, within DvMF_1157at 1421.663 kb on + strand, within DvMF_1157at 1421.758 kb on + strand, within DvMF_1157at 1421.879 kb on + strand, within DvMF_1157at 1421.948 kb on + strand, within DvMF_1157at 1421.948 kb on + strand, within DvMF_1157at 1421.967 kb on - strand, within DvMF_1157at 1422.276 kb on + strand, within DvMF_1157at 1422.284 kb on - strand, within DvMF_1157at 1422.353 kb on + strand, within DvMF_1157at 1422.366 kb on - strand, within DvMF_1157at 1422.461 kb on + strandat 1422.613 kb on + strandat 1422.958 kb on - strand, within DvMF_1158at 1423.188 kb on + strand, within DvMF_1158at 1423.355 kb on - strand, within DvMF_1158at 1423.601 kb on + strand, within DvMF_1158

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,419,457 + DvMF_1156 0.66 -0.0
1,419,564 + DvMF_1156 0.71 -0.1
1,419,591 - DvMF_1156 0.72 +0.3
1,420,165 - -0.4
1,420,359 - -0.4
1,420,478 + +1.3
1,420,880 - DvMF_1157 0.20 +0.4
1,420,893 + DvMF_1157 0.21 +0.8
1,421,037 + DvMF_1157 0.27 +0.3
1,421,052 - DvMF_1157 0.28 +0.7
1,421,073 - DvMF_1157 0.29 +0.5
1,421,078 + DvMF_1157 0.29 +0.5
1,421,286 - DvMF_1157 0.39 +0.6
1,421,286 - DvMF_1157 0.39 +0.5
1,421,467 + DvMF_1157 0.47 +0.7
1,421,663 + DvMF_1157 0.56 +2.1
1,421,758 + DvMF_1157 0.60 +0.8
1,421,879 + DvMF_1157 0.66 +0.8
1,421,948 + DvMF_1157 0.69 +0.6
1,421,948 + DvMF_1157 0.69 +1.2
1,421,967 - DvMF_1157 0.70 +0.9
1,422,276 + DvMF_1157 0.84 +0.7
1,422,284 - DvMF_1157 0.85 +2.6
1,422,353 + DvMF_1157 0.88 +0.7
1,422,366 - DvMF_1157 0.88 +0.7
1,422,461 + +1.3
1,422,613 + +0.3
1,422,958 - DvMF_1158 0.16 -0.7
1,423,188 + DvMF_1158 0.34 -1.4
1,423,355 - DvMF_1158 0.47 -2.9
1,423,601 + DvMF_1158 0.66 -1.4

Or see this region's nucleotide sequence