Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1101

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1100 and DvMF_1101 are separated by 569 nucleotidesDvMF_1101 and DvMF_1102 are separated by 348 nucleotides DvMF_1100: DvMF_1100 - secretion protein HlyD family protein (RefSeq), at 1,347,141 to 1,348,472 _1100 DvMF_1101: DvMF_1101 - extracellular solute-binding protein family 3 (RefSeq), at 1,349,042 to 1,349,929 _1101 DvMF_1102: DvMF_1102 - putative PAS/PAC sensor protein (RefSeq), at 1,350,278 to 1,352,341 _1102 Position (kb) 1349 1350Strain fitness (log2 ratio) -1 0 1 2at 1348.446 kb on + strandat 1348.486 kb on - strandat 1349.277 kb on + strand, within DvMF_1101at 1349.298 kb on + strand, within DvMF_1101at 1349.401 kb on + strand, within DvMF_1101at 1349.416 kb on + strand, within DvMF_1101at 1349.504 kb on - strand, within DvMF_1101at 1349.638 kb on - strand, within DvMF_1101at 1349.752 kb on + strand, within DvMF_1101at 1349.913 kb on - strandat 1349.979 kb on + strandat 1349.987 kb on - strandat 1350.026 kb on - strandat 1350.104 kb on + strandat 1350.112 kb on - strandat 1350.207 kb on + strandat 1350.452 kb on + strandat 1350.914 kb on - strand, within DvMF_1102

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,348,446 + -1.0
1,348,486 - +0.0
1,349,277 + DvMF_1101 0.26 -1.2
1,349,298 + DvMF_1101 0.29 +0.3
1,349,401 + DvMF_1101 0.40 -0.7
1,349,416 + DvMF_1101 0.42 -0.9
1,349,504 - DvMF_1101 0.52 -1.2
1,349,638 - DvMF_1101 0.67 -0.8
1,349,752 + DvMF_1101 0.80 -1.2
1,349,913 - -0.4
1,349,979 + -0.6
1,349,987 - +1.8
1,350,026 - -1.4
1,350,104 + -0.3
1,350,112 - -0.5
1,350,207 + -0.4
1,350,452 + -0.2
1,350,914 - DvMF_1102 0.31 +0.7

Or see this region's nucleotide sequence