Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1087

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1086 and DvMF_1087 are separated by 397 nucleotidesDvMF_1087 and DvMF_1088 are separated by 191 nucleotides DvMF_1086: DvMF_1086 - hypothetical protein (RefSeq), at 1,324,781 to 1,325,494 _1086 DvMF_1087: DvMF_1087 - hypothetical protein (RefSeq), at 1,325,892 to 1,326,509 _1087 DvMF_1088: DvMF_1088 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,326,701 to 1,329,169 _1088 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -1 0 1 2at 1325.112 kb on + strand, within DvMF_1086at 1325.236 kb on + strand, within DvMF_1086at 1325.294 kb on + strand, within DvMF_1086at 1325.442 kb on + strandat 1325.640 kb on + strandat 1325.712 kb on + strandat 1325.915 kb on - strandat 1326.056 kb on + strand, within DvMF_1087at 1326.110 kb on - strand, within DvMF_1087at 1326.259 kb on - strand, within DvMF_1087at 1326.264 kb on + strand, within DvMF_1087at 1326.340 kb on + strand, within DvMF_1087at 1326.422 kb on - strand, within DvMF_1087at 1326.464 kb on - strandat 1326.603 kb on + strandat 1326.618 kb on + strandat 1326.624 kb on + strandat 1326.917 kb on - strandat 1326.971 kb on + strand, within DvMF_1088at 1327.096 kb on + strand, within DvMF_1088at 1327.096 kb on + strand, within DvMF_1088at 1327.096 kb on + strand, within DvMF_1088at 1327.096 kb on + strand, within DvMF_1088at 1327.098 kb on - strand, within DvMF_1088at 1327.104 kb on - strand, within DvMF_1088at 1327.104 kb on - strand, within DvMF_1088at 1327.104 kb on - strand, within DvMF_1088at 1327.104 kb on - strand, within DvMF_1088at 1327.104 kb on - strand, within DvMF_1088at 1327.137 kb on + strand, within DvMF_1088

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,325,112 + DvMF_1086 0.46 -0.2
1,325,236 + DvMF_1086 0.64 +2.1
1,325,294 + DvMF_1086 0.72 -0.4
1,325,442 + +0.3
1,325,640 + +0.5
1,325,712 + -0.2
1,325,915 - +0.0
1,326,056 + DvMF_1087 0.27 -0.7
1,326,110 - DvMF_1087 0.35 -0.8
1,326,259 - DvMF_1087 0.59 +0.6
1,326,264 + DvMF_1087 0.60 +0.1
1,326,340 + DvMF_1087 0.72 -0.4
1,326,422 - DvMF_1087 0.86 -0.6
1,326,464 - -0.5
1,326,603 + -0.2
1,326,618 + -0.6
1,326,624 + -0.4
1,326,917 - -0.7
1,326,971 + DvMF_1088 0.11 -0.6
1,327,096 + DvMF_1088 0.16 -0.8
1,327,096 + DvMF_1088 0.16 -0.3
1,327,096 + DvMF_1088 0.16 -0.6
1,327,096 + DvMF_1088 0.16 -1.1
1,327,098 - DvMF_1088 0.16 -0.7
1,327,104 - DvMF_1088 0.16 +0.3
1,327,104 - DvMF_1088 0.16 -0.2
1,327,104 - DvMF_1088 0.16 -1.0
1,327,104 - DvMF_1088 0.16 -0.8
1,327,104 - DvMF_1088 0.16 +0.2
1,327,137 + DvMF_1088 0.18 -0.9

Or see this region's nucleotide sequence