Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1021 and DvMF_1022 are separated by 151 nucleotides DvMF_1022 and DvMF_R0029 are separated by 230 nucleotides DvMF_R0029 and DvMF_1023 are separated by 247 nucleotides
DvMF_1021: DvMF_1021 - two component transcriptional regulator, LuxR family (RefSeq), at 1,237,817 to 1,238,467
_1021
DvMF_1022: DvMF_1022 - hypothetical protein (RefSeq), at 1,238,619 to 1,239,476
_1022
DvMF_R0029: DvMF_R0029 - tRNA-Leu (RefSeq), at 1,239,707 to 1,239,793
_R0029
DvMF_1023: DvMF_1023 - transcriptional regulator, LuxR family (RefSeq), at 1,240,041 to 1,242,095
_1023
Position (kb)
1238
1239
1240 Strain fitness (log2 ratio)
-1
0
1
2 at 1237.680 kb on - strand at 1237.866 kb on + strand at 1237.875 kb on - strand at 1238.352 kb on - strand, within DvMF_1021 at 1238.364 kb on - strand, within DvMF_1021 at 1238.423 kb on - strand at 1238.838 kb on + strand, within DvMF_1022 at 1238.909 kb on + strand, within DvMF_1022 at 1238.909 kb on + strand, within DvMF_1022 at 1238.917 kb on - strand, within DvMF_1022 at 1239.266 kb on + strand, within DvMF_1022 at 1239.295 kb on + strand, within DvMF_1022 at 1239.887 kb on - strand at 1239.923 kb on + strand at 1240.447 kb on + strand, within DvMF_1023
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,237,680 - +0.3 1,237,866 + -0.1 1,237,875 - +2.0 1,238,352 - DvMF_1021 0.82 +0.5 1,238,364 - DvMF_1021 0.84 +0.1 1,238,423 - +0.5 1,238,838 + DvMF_1022 0.26 +0.2 1,238,909 + DvMF_1022 0.34 -0.3 1,238,909 + DvMF_1022 0.34 +0.2 1,238,917 - DvMF_1022 0.35 +1.8 1,239,266 + DvMF_1022 0.75 +0.4 1,239,295 + DvMF_1022 0.79 +0.0 1,239,887 - -0.4 1,239,923 + -0.8 1,240,447 + DvMF_1023 0.20 -0.2
Or see this region's nucleotide sequence