Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0991

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0990 and DvMF_0991 overlap by 17 nucleotidesDvMF_0991 and DvMF_0992 are separated by 96 nucleotidesDvMF_0992 and DvMF_0993 are separated by 206 nucleotides DvMF_0990: DvMF_0990 - iron-containing alcohol dehydrogenase (RefSeq), at 1,203,243 to 1,204,403 _0990 DvMF_0991: DvMF_0991 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,204,387 to 1,206,210 _0991 DvMF_0992: DvMF_0992 - hypothetical protein (RefSeq), at 1,206,307 to 1,206,990 _0992 DvMF_0993: DvMF_0993 - transcriptional regulator, Crp/Fnr family (RefSeq), at 1,207,197 to 1,207,886 _0993 Position (kb) 1204 1205 1206 1207Strain fitness (log2 ratio) -1 0 1 2at 1203.512 kb on + strand, within DvMF_0990at 1203.554 kb on - strand, within DvMF_0990at 1203.554 kb on - strand, within DvMF_0990at 1203.554 kb on - strand, within DvMF_0990at 1203.556 kb on + strand, within DvMF_0990at 1203.556 kb on + strand, within DvMF_0990at 1203.596 kb on + strand, within DvMF_0990at 1203.626 kb on + strand, within DvMF_0990at 1203.634 kb on - strand, within DvMF_0990at 1203.851 kb on + strand, within DvMF_0990at 1203.852 kb on + strand, within DvMF_0990at 1204.040 kb on - strand, within DvMF_0990at 1204.049 kb on - strand, within DvMF_0990at 1204.085 kb on + strand, within DvMF_0990at 1204.277 kb on + strand, within DvMF_0990at 1204.372 kb on + strandat 1204.620 kb on - strand, within DvMF_0991at 1204.699 kb on - strand, within DvMF_0991at 1204.804 kb on - strand, within DvMF_0991at 1204.898 kb on + strand, within DvMF_0991at 1205.016 kb on + strand, within DvMF_0991at 1205.053 kb on - strand, within DvMF_0991at 1205.118 kb on - strand, within DvMF_0991at 1205.193 kb on - strand, within DvMF_0991at 1205.356 kb on - strand, within DvMF_0991at 1205.378 kb on + strand, within DvMF_0991at 1205.839 kb on - strand, within DvMF_0991at 1206.205 kb on + strandat 1206.205 kb on + strandat 1206.293 kb on + strandat 1206.322 kb on - strandat 1206.741 kb on + strand, within DvMF_0992at 1206.749 kb on - strand, within DvMF_0992at 1206.804 kb on + strand, within DvMF_0992at 1206.811 kb on - strand, within DvMF_0992at 1207.157 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,203,512 + DvMF_0990 0.23 -1.2
1,203,554 - DvMF_0990 0.27 +0.2
1,203,554 - DvMF_0990 0.27 -1.3
1,203,554 - DvMF_0990 0.27 -1.1
1,203,556 + DvMF_0990 0.27 +0.1
1,203,556 + DvMF_0990 0.27 -0.9
1,203,596 + DvMF_0990 0.30 -0.3
1,203,626 + DvMF_0990 0.33 -1.1
1,203,634 - DvMF_0990 0.34 -1.2
1,203,851 + DvMF_0990 0.52 -1.1
1,203,852 + DvMF_0990 0.52 -0.6
1,204,040 - DvMF_0990 0.69 -0.1
1,204,049 - DvMF_0990 0.69 -0.2
1,204,085 + DvMF_0990 0.73 -0.4
1,204,277 + DvMF_0990 0.89 +2.0
1,204,372 + -0.4
1,204,620 - DvMF_0991 0.13 -1.0
1,204,699 - DvMF_0991 0.17 -0.8
1,204,804 - DvMF_0991 0.23 -1.3
1,204,898 + DvMF_0991 0.28 -1.3
1,205,016 + DvMF_0991 0.34 -1.2
1,205,053 - DvMF_0991 0.37 -1.0
1,205,118 - DvMF_0991 0.40 -1.4
1,205,193 - DvMF_0991 0.44 +0.1
1,205,356 - DvMF_0991 0.53 -1.1
1,205,378 + DvMF_0991 0.54 -1.2
1,205,839 - DvMF_0991 0.80 -1.0
1,206,205 + -0.4
1,206,205 + -0.9
1,206,293 + -0.6
1,206,322 - -0.6
1,206,741 + DvMF_0992 0.63 -0.9
1,206,749 - DvMF_0992 0.65 +0.1
1,206,804 + DvMF_0992 0.73 +1.5
1,206,811 - DvMF_0992 0.74 -0.9
1,207,157 + +0.3

Or see this region's nucleotide sequence