Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0908

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0907 and DvMF_0908 are separated by 544 nucleotidesDvMF_0908 and DvMF_0909 are separated by 76 nucleotides DvMF_0907: DvMF_0907 - NADH dehydrogenase (ubiquinone) (RefSeq), at 1,090,604 to 1,091,962 _0907 DvMF_0908: DvMF_0908 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 1,092,507 to 1,093,670 _0908 DvMF_0909: DvMF_0909 - cytidylate kinase (RefSeq), at 1,093,747 to 1,094,406 _0909 Position (kb) 1092 1093 1094Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1091.520 kb on - strand, within DvMF_0907at 1091.662 kb on - strand, within DvMF_0907at 1091.729 kb on - strand, within DvMF_0907at 1092.095 kb on - strandat 1092.180 kb on + strandat 1092.285 kb on + strandat 1092.295 kb on + strandat 1092.303 kb on + strandat 1092.303 kb on - strandat 1092.563 kb on + strandat 1092.568 kb on + strandat 1092.571 kb on - strandat 1092.871 kb on - strand, within DvMF_0908at 1092.874 kb on + strand, within DvMF_0908at 1092.884 kb on + strand, within DvMF_0908at 1093.008 kb on - strand, within DvMF_0908at 1093.037 kb on - strand, within DvMF_0908at 1093.190 kb on - strand, within DvMF_0908at 1093.387 kb on + strand, within DvMF_0908at 1093.427 kb on + strand, within DvMF_0908at 1093.497 kb on + strand, within DvMF_0908at 1093.573 kb on + strandat 1093.696 kb on + strandat 1093.928 kb on + strand, within DvMF_0909at 1094.251 kb on + strand, within DvMF_0909at 1094.272 kb on + strand, within DvMF_0909

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,091,520 - DvMF_0907 0.67 -0.1
1,091,662 - DvMF_0907 0.78 -0.3
1,091,729 - DvMF_0907 0.83 -0.3
1,092,095 - -0.2
1,092,180 + -1.0
1,092,285 + -0.3
1,092,295 + -0.4
1,092,303 + -0.1
1,092,303 - +0.1
1,092,563 + -4.2
1,092,568 + -6.2
1,092,571 - -5.2
1,092,871 - DvMF_0908 0.31 -5.7
1,092,874 + DvMF_0908 0.32 -4.5
1,092,884 + DvMF_0908 0.32 -5.7
1,093,008 - DvMF_0908 0.43 -5.6
1,093,037 - DvMF_0908 0.46 -5.9
1,093,190 - DvMF_0908 0.59 -4.7
1,093,387 + DvMF_0908 0.76 -6.8
1,093,427 + DvMF_0908 0.79 -5.5
1,093,497 + DvMF_0908 0.85 -4.2
1,093,573 + -5.7
1,093,696 + -0.4
1,093,928 + DvMF_0909 0.27 -0.2
1,094,251 + DvMF_0909 0.76 +0.0
1,094,272 + DvMF_0909 0.80 +0.1

Or see this region's nucleotide sequence