Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0905

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0904 and DvMF_0905 are separated by 292 nucleotidesDvMF_0905 and DvMF_0906 are separated by 276 nucleotidesDvMF_0906 and DvMF_0907 are separated by 223 nucleotides DvMF_0904: DvMF_0904 - 2'-5' RNA ligase (RefSeq), at 1,088,007 to 1,088,822 _0904 DvMF_0905: DvMF_0905 - hypothetical protein (RefSeq), at 1,089,115 to 1,089,660 _0905 DvMF_0906: DvMF_0906 - UspA domain protein (RefSeq), at 1,089,937 to 1,090,380 _0906 DvMF_0907: DvMF_0907 - NADH dehydrogenase (ubiquinone) (RefSeq), at 1,090,604 to 1,091,962 _0907 Position (kb) 1089 1090Strain fitness (log2 ratio) -1 0 1at 1088.126 kb on + strand, within DvMF_0904at 1088.416 kb on + strand, within DvMF_0904at 1088.424 kb on - strand, within DvMF_0904at 1088.480 kb on - strand, within DvMF_0904at 1088.485 kb on - strand, within DvMF_0904at 1088.520 kb on - strand, within DvMF_0904at 1088.545 kb on + strand, within DvMF_0904at 1088.726 kb on + strand, within DvMF_0904at 1088.792 kb on - strandat 1088.911 kb on - strandat 1089.001 kb on - strandat 1089.027 kb on - strandat 1089.593 kb on + strand, within DvMF_0905at 1090.299 kb on - strand, within DvMF_0906at 1090.299 kb on - strand, within DvMF_0906at 1090.397 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,088,126 + DvMF_0904 0.15 -0.5
1,088,416 + DvMF_0904 0.50 -0.1
1,088,424 - DvMF_0904 0.51 -0.3
1,088,480 - DvMF_0904 0.58 +0.2
1,088,485 - DvMF_0904 0.59 -0.2
1,088,520 - DvMF_0904 0.63 -0.3
1,088,545 + DvMF_0904 0.66 -0.5
1,088,726 + DvMF_0904 0.88 -0.9
1,088,792 - -0.7
1,088,911 - -0.7
1,089,001 - -0.4
1,089,027 - -0.0
1,089,593 + DvMF_0905 0.88 +0.4
1,090,299 - DvMF_0906 0.82 +0.7
1,090,299 - DvMF_0906 0.82 -0.6
1,090,397 + -0.1

Or see this region's nucleotide sequence