Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0904 and DvMF_0905 are separated by 292 nucleotides DvMF_0905 and DvMF_0906 are separated by 276 nucleotides DvMF_0906 and DvMF_0907 are separated by 223 nucleotides
DvMF_0904: DvMF_0904 - 2'-5' RNA ligase (RefSeq), at 1,088,007 to 1,088,822
_0904
DvMF_0905: DvMF_0905 - hypothetical protein (RefSeq), at 1,089,115 to 1,089,660
_0905
DvMF_0906: DvMF_0906 - UspA domain protein (RefSeq), at 1,089,937 to 1,090,380
_0906
DvMF_0907: DvMF_0907 - NADH dehydrogenase (ubiquinone) (RefSeq), at 1,090,604 to 1,091,962
_0907
Position (kb)
1089
1090 Strain fitness (log2 ratio)
-1
0
1 at 1088.126 kb on + strand, within DvMF_0904 at 1088.416 kb on + strand, within DvMF_0904 at 1088.424 kb on - strand, within DvMF_0904 at 1088.480 kb on - strand, within DvMF_0904 at 1088.485 kb on - strand, within DvMF_0904 at 1088.520 kb on - strand, within DvMF_0904 at 1088.545 kb on + strand, within DvMF_0904 at 1088.726 kb on + strand, within DvMF_0904 at 1088.792 kb on - strand at 1088.911 kb on - strand at 1089.001 kb on - strand at 1089.027 kb on - strand at 1089.593 kb on + strand, within DvMF_0905 at 1090.299 kb on - strand, within DvMF_0906 at 1090.299 kb on - strand, within DvMF_0906 at 1090.397 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,088,126 + DvMF_0904 0.15 -0.5 1,088,416 + DvMF_0904 0.50 -0.1 1,088,424 - DvMF_0904 0.51 -0.3 1,088,480 - DvMF_0904 0.58 +0.2 1,088,485 - DvMF_0904 0.59 -0.2 1,088,520 - DvMF_0904 0.63 -0.3 1,088,545 + DvMF_0904 0.66 -0.5 1,088,726 + DvMF_0904 0.88 -0.9 1,088,792 - -0.7 1,088,911 - -0.7 1,089,001 - -0.4 1,089,027 - -0.0 1,089,593 + DvMF_0905 0.88 +0.4 1,090,299 - DvMF_0906 0.82 +0.7 1,090,299 - DvMF_0906 0.82 -0.6 1,090,397 + -0.1
Or see this region's nucleotide sequence