Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0900 and DvMF_0901 are separated by 124 nucleotides DvMF_0901 and DvMF_0902 are separated by 267 nucleotides DvMF_0902 and DvMF_0903 are separated by 155 nucleotides DvMF_0903 and DvMF_0904 are separated by 96 nucleotides
DvMF_0900: DvMF_0900 - Glucokinase (RefSeq), at 1,084,479 to 1,085,576
_0900
DvMF_0901: DvMF_0901 - type IV pilus assembly PilZ (RefSeq), at 1,085,701 to 1,086,051
_0901
DvMF_0902: DvMF_0902 - hypothetical protein (RefSeq), at 1,086,319 to 1,087,098
_0902
DvMF_0903: DvMF_0903 - CinA domain protein (RefSeq), at 1,087,254 to 1,087,910
_0903
DvMF_0904: DvMF_0904 - 2'-5' RNA ligase (RefSeq), at 1,088,007 to 1,088,822
_0904
Position (kb)
1086
1087
1088 Strain fitness (log2 ratio)
-1
0
1
2 at 1086.104 kb on + strand at 1086.104 kb on + strand at 1086.137 kb on + strand at 1086.302 kb on - strand at 1086.639 kb on - strand, within DvMF_0902 at 1086.721 kb on - strand, within DvMF_0902 at 1086.783 kb on + strand, within DvMF_0902 at 1086.791 kb on - strand, within DvMF_0902 at 1086.793 kb on + strand, within DvMF_0902 at 1086.985 kb on + strand, within DvMF_0902 at 1087.031 kb on + strand at 1087.137 kb on - strand at 1087.137 kb on - strand at 1087.634 kb on + strand, within DvMF_0903 at 1087.672 kb on + strand, within DvMF_0903 at 1087.691 kb on - strand, within DvMF_0903 at 1087.944 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,086,104 + +0.6 1,086,104 + -0.4 1,086,137 + -0.6 1,086,302 - -0.5 1,086,639 - DvMF_0902 0.41 -0.5 1,086,721 - DvMF_0902 0.52 -0.3 1,086,783 + DvMF_0902 0.59 -0.1 1,086,791 - DvMF_0902 0.61 +2.2 1,086,793 + DvMF_0902 0.61 -1.3 1,086,985 + DvMF_0902 0.85 +0.3 1,087,031 + -0.1 1,087,137 - +0.8 1,087,137 - -0.4 1,087,634 + DvMF_0903 0.58 -0.5 1,087,672 + DvMF_0903 0.64 -0.3 1,087,691 - DvMF_0903 0.67 -0.2 1,087,944 + -0.3
Or see this region's nucleotide sequence