Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0902

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0900 and DvMF_0901 are separated by 124 nucleotidesDvMF_0901 and DvMF_0902 are separated by 267 nucleotidesDvMF_0902 and DvMF_0903 are separated by 155 nucleotidesDvMF_0903 and DvMF_0904 are separated by 96 nucleotides DvMF_0900: DvMF_0900 - Glucokinase (RefSeq), at 1,084,479 to 1,085,576 _0900 DvMF_0901: DvMF_0901 - type IV pilus assembly PilZ (RefSeq), at 1,085,701 to 1,086,051 _0901 DvMF_0902: DvMF_0902 - hypothetical protein (RefSeq), at 1,086,319 to 1,087,098 _0902 DvMF_0903: DvMF_0903 - CinA domain protein (RefSeq), at 1,087,254 to 1,087,910 _0903 DvMF_0904: DvMF_0904 - 2'-5' RNA ligase (RefSeq), at 1,088,007 to 1,088,822 _0904 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -1 0 1 2at 1086.104 kb on + strandat 1086.104 kb on + strandat 1086.137 kb on + strandat 1086.302 kb on - strandat 1086.639 kb on - strand, within DvMF_0902at 1086.721 kb on - strand, within DvMF_0902at 1086.783 kb on + strand, within DvMF_0902at 1086.791 kb on - strand, within DvMF_0902at 1086.793 kb on + strand, within DvMF_0902at 1086.985 kb on + strand, within DvMF_0902at 1087.031 kb on + strandat 1087.137 kb on - strandat 1087.137 kb on - strandat 1087.634 kb on + strand, within DvMF_0903at 1087.672 kb on + strand, within DvMF_0903at 1087.691 kb on - strand, within DvMF_0903at 1087.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,086,104 + +0.6
1,086,104 + -0.4
1,086,137 + -0.6
1,086,302 - -0.5
1,086,639 - DvMF_0902 0.41 -0.5
1,086,721 - DvMF_0902 0.52 -0.3
1,086,783 + DvMF_0902 0.59 -0.1
1,086,791 - DvMF_0902 0.61 +2.2
1,086,793 + DvMF_0902 0.61 -1.3
1,086,985 + DvMF_0902 0.85 +0.3
1,087,031 + -0.1
1,087,137 - +0.8
1,087,137 - -0.4
1,087,634 + DvMF_0903 0.58 -0.5
1,087,672 + DvMF_0903 0.64 -0.3
1,087,691 - DvMF_0903 0.67 -0.2
1,087,944 + -0.3

Or see this region's nucleotide sequence