Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0570

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0569 and DvMF_0570 are separated by 374 nucleotidesDvMF_0570 and DvMF_0571 are separated by 451 nucleotides DvMF_0569: DvMF_0569 - chaperone DnaJ domain protein (RefSeq), at 672,070 to 673,026 _0569 DvMF_0570: DvMF_0570 - polysaccharide deacetylase (RefSeq), at 673,401 to 674,552 _0570 DvMF_0571: DvMF_0571 - outer membrane autotransporter barrel domain protein (RefSeq), at 675,004 to 676,917 _0571 Position (kb) 673 674 675Strain fitness (log2 ratio) -2 -1 0 1 2at 672.525 kb on + strand, within DvMF_0569at 672.723 kb on + strand, within DvMF_0569at 672.731 kb on - strand, within DvMF_0569at 672.951 kb on + strandat 673.265 kb on - strandat 673.330 kb on - strandat 673.704 kb on + strand, within DvMF_0570at 673.743 kb on - strand, within DvMF_0570at 673.769 kb on - strand, within DvMF_0570at 674.942 kb on + strandat 675.046 kb on - strandat 675.124 kb on + strandat 675.148 kb on - strandat 675.349 kb on + strand, within DvMF_0571at 675.418 kb on + strand, within DvMF_0571at 675.441 kb on - strand, within DvMF_0571at 675.451 kb on - strand, within DvMF_0571at 675.494 kb on + strand, within DvMF_0571at 675.502 kb on - strand, within DvMF_0571

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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672,525 + DvMF_0569 0.48 -0.4
672,723 + DvMF_0569 0.68 -0.7
672,731 - DvMF_0569 0.69 -0.6
672,951 + -0.7
673,265 - -0.4
673,330 - -0.2
673,704 + DvMF_0570 0.26 -2.3
673,743 - DvMF_0570 0.30 +0.8
673,769 - DvMF_0570 0.32 +1.8
674,942 + -0.3
675,046 - +0.2
675,124 + -0.4
675,148 - -0.9
675,349 + DvMF_0571 0.18 +0.1
675,418 + DvMF_0571 0.22 -0.4
675,441 - DvMF_0571 0.23 -0.3
675,451 - DvMF_0571 0.23 -0.4
675,494 + DvMF_0571 0.26 -0.2
675,502 - DvMF_0571 0.26 +0.1

Or see this region's nucleotide sequence