Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0555 and DvMF_0556 overlap by 20 nucleotides DvMF_0556 and DvMF_0557 are separated by 24 nucleotides DvMF_0557 and DvMF_0558 are separated by 215 nucleotides DvMF_0558 and DvMF_0559 are separated by 156 nucleotides
DvMF_0555: DvMF_0555 - Peptide chain release factor 2 (NCBI), at 655,655 to 656,786
_0555
DvMF_0556: DvMF_0556 - diguanylate cyclase (RefSeq), at 656,767 to 657,711
_0556
DvMF_0557: DvMF_0557 - flagellar synthesis regulator FleN, putative (RefSeq), at 657,736 to 658,554
_0557
DvMF_0558: DvMF_0558 - histone family protein DNA-binding protein (RefSeq), at 658,770 to 659,045
_0558
DvMF_0559: DvMF_0559 - collagen triple helix repeat protein (RefSeq), at 659,202 to 659,684
_0559
Position (kb) 657
658
659 Strain fitness (log2 ratio) -1
0
1
2 at 656.749 kb on - strand at 657.094 kb on - strand, within DvMF_0556 at 657.103 kb on + strand, within DvMF_0556 at 657.234 kb on - strand, within DvMF_0556 at 657.315 kb on - strand, within DvMF_0556 at 657.315 kb on - strand, within DvMF_0556 at 657.356 kb on - strand, within DvMF_0556 at 657.430 kb on - strand, within DvMF_0556 at 657.585 kb on - strand, within DvMF_0556 at 657.803 kb on - strand at 657.928 kb on + strand, within DvMF_0557 at 658.140 kb on - strand, within DvMF_0557 at 658.205 kb on + strand, within DvMF_0557 at 658.386 kb on + strand, within DvMF_0557 at 658.534 kb on + strand at 658.625 kb on - strand at 659.300 kb on - strand, within DvMF_0559
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 656,749 - +1.2 657,094 - DvMF_0556 0.35 +2.0 657,103 + DvMF_0556 0.36 +2.1 657,234 - DvMF_0556 0.49 +2.2 657,315 - DvMF_0556 0.58 +2.4 657,315 - DvMF_0556 0.58 +2.0 657,356 - DvMF_0556 0.62 +2.3 657,430 - DvMF_0556 0.70 +2.3 657,585 - DvMF_0556 0.87 +2.0 657,803 - +1.2 657,928 + DvMF_0557 0.23 +1.5 658,140 - DvMF_0557 0.49 +1.4 658,205 + DvMF_0557 0.57 +1.3 658,386 + DvMF_0557 0.79 +1.3 658,534 + -0.5 658,625 - -1.5 659,300 - DvMF_0559 0.20 -0.1
Or see this region's nucleotide sequence