Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0459

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0458 and DvMF_0459 are separated by 1 nucleotidesDvMF_0459 and DvMF_0460 are separated by 477 nucleotides DvMF_0458: DvMF_0458 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 536,831 to 539,281 _0458 DvMF_0459: DvMF_0459 - ATP-dependent Clp protease adaptor protein ClpS (RefSeq), at 539,283 to 539,585 _0459 DvMF_0460: DvMF_0460 - adenylate cyclase (RefSeq), at 540,063 to 540,740 _0460 Position (kb) 539 540Strain fitness (log2 ratio) -1 0 1at 538.511 kb on - strand, within DvMF_0458at 538.511 kb on - strand, within DvMF_0458at 538.990 kb on - strand, within DvMF_0458at 539.037 kb on + strandat 539.042 kb on + strandat 539.281 kb on + strandat 539.281 kb on + strandat 539.291 kb on + strandat 539.366 kb on + strand, within DvMF_0459at 539.379 kb on - strand, within DvMF_0459at 539.885 kb on + strandat 539.900 kb on - strandat 539.920 kb on + strandat 540.080 kb on + strandat 540.234 kb on + strand, within DvMF_0460at 540.324 kb on + strand, within DvMF_0460

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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538,511 - DvMF_0458 0.69 -0.2
538,511 - DvMF_0458 0.69 +0.2
538,990 - DvMF_0458 0.88 -0.2
539,037 + +0.3
539,042 + +0.0
539,281 + -0.3
539,281 + -0.4
539,291 + +0.2
539,366 + DvMF_0459 0.27 +0.6
539,379 - DvMF_0459 0.32 -0.3
539,885 + -0.3
539,900 - -0.0
539,920 + -0.3
540,080 + +0.0
540,234 + DvMF_0460 0.25 +0.5
540,324 + DvMF_0460 0.38 +0.4

Or see this region's nucleotide sequence