Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0306

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0305 and DvMF_0306 are separated by 464 nucleotidesDvMF_0306 and hslU are separated by 231 nucleotides DvMF_0305: DvMF_0305 - split soret cytochrome c precursor (RefSeq), at 351,178 to 352,026 _0305 DvMF_0306: DvMF_0306 - acetylglutamate kinase (RefSeq), at 352,491 to 353,453 _0306 DvMF_0307: hslU - ATP-dependent protease ATP-binding subunit HslU (RefSeq), at 353,685 to 355,136 hslU Position (kb) 352 353 354Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 351.518 kb on + strand, within DvMF_0305at 351.545 kb on - strand, within DvMF_0305at 351.619 kb on - strand, within DvMF_0305at 351.629 kb on - strand, within DvMF_0305at 351.771 kb on + strand, within DvMF_0305at 351.785 kb on + strand, within DvMF_0305at 351.822 kb on - strand, within DvMF_0305at 351.874 kb on + strand, within DvMF_0305at 351.986 kb on + strandat 352.162 kb on - strandat 352.651 kb on - strand, within DvMF_0306at 352.742 kb on + strand, within DvMF_0306at 352.776 kb on - strand, within DvMF_0306at 352.930 kb on - strand, within DvMF_0306at 353.184 kb on + strand, within DvMF_0306at 353.284 kb on + strand, within DvMF_0306at 353.557 kb on + strandat 353.786 kb on - strandat 353.950 kb on + strand, within hslUat 354.111 kb on + strand, within hslUat 354.275 kb on - strand, within hslUat 354.288 kb on + strand, within hslUat 354.347 kb on + strand, within hslU

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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351,518 + DvMF_0305 0.40 -0.0
351,545 - DvMF_0305 0.43 -0.9
351,619 - DvMF_0305 0.52 -0.4
351,629 - DvMF_0305 0.53 -0.6
351,771 + DvMF_0305 0.70 +0.2
351,785 + DvMF_0305 0.71 -0.0
351,822 - DvMF_0305 0.76 -0.1
351,874 + DvMF_0305 0.82 -0.4
351,986 + -0.7
352,162 - -0.6
352,651 - DvMF_0306 0.17 -5.3
352,742 + DvMF_0306 0.26 -4.1
352,776 - DvMF_0306 0.30 -5.1
352,930 - DvMF_0306 0.46 -6.9
353,184 + DvMF_0306 0.72 -8.0
353,284 + DvMF_0306 0.82 -5.1
353,557 + -0.5
353,786 - -0.8
353,950 + hslU DvMF_0307 0.18 +0.1
354,111 + hslU DvMF_0307 0.29 -1.0
354,275 - hslU DvMF_0307 0.41 +0.4
354,288 + hslU DvMF_0307 0.42 -0.5
354,347 + hslU DvMF_0307 0.46 +0.1

Or see this region's nucleotide sequence