Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0170 and DvMF_0171 are separated by 437 nucleotides DvMF_0171 and DvMF_0172 are separated by 113 nucleotides DvMF_0172 and coaD overlap by 25 nucleotides
DvMF_0170: DvMF_0170 - hypothetical protein (RefSeq), at 186,210 to 186,866
_0170
DvMF_0171: DvMF_0171 - beta-lactamase domain protein (RefSeq), at 187,304 to 188,914
_0171
DvMF_0172: DvMF_0172 - methyltransferase (RefSeq), at 189,028 to 189,600
_0172
DvMF_0173: coaD - phosphopantetheine adenylyltransferase (RefSeq), at 189,576 to 190,337
coaD
Position (kb) 187
188
189 Strain fitness (log2 ratio) -1
0
1 at 186.365 kb on + strand, within DvMF_0170 at 186.367 kb on - strand, within DvMF_0170 at 186.411 kb on + strand, within DvMF_0170 at 186.851 kb on + strand at 187.271 kb on + strand at 187.604 kb on - strand, within DvMF_0171 at 188.072 kb on + strand, within DvMF_0171 at 188.074 kb on + strand, within DvMF_0171 at 188.080 kb on - strand, within DvMF_0171 at 188.460 kb on + strand, within DvMF_0171 at 188.468 kb on - strand, within DvMF_0171 at 188.564 kb on - strand, within DvMF_0171 at 188.578 kb on + strand, within DvMF_0171 at 188.597 kb on - strand, within DvMF_0171 at 188.655 kb on + strand, within DvMF_0171 at 188.679 kb on + strand, within DvMF_0171 at 188.714 kb on + strand, within DvMF_0171 at 189.163 kb on - strand, within DvMF_0172 at 189.187 kb on - strand, within DvMF_0172 at 189.297 kb on + strand, within DvMF_0172 at 189.301 kb on - strand, within DvMF_0172
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 186,365 + DvMF_0170 0.24 -0.6 186,367 - DvMF_0170 0.24 -0.7 186,411 + DvMF_0170 0.31 -0.6 186,851 + -1.0 187,271 + -0.9 187,604 - DvMF_0171 0.19 +0.3 188,072 + DvMF_0171 0.48 +1.1 188,074 + DvMF_0171 0.48 +0.4 188,080 - DvMF_0171 0.48 +0.4 188,460 + DvMF_0171 0.72 +0.1 188,468 - DvMF_0171 0.72 +0.9 188,564 - DvMF_0171 0.78 +0.7 188,578 + DvMF_0171 0.79 -1.2 188,597 - DvMF_0171 0.80 +0.6 188,655 + DvMF_0171 0.84 +0.5 188,679 + DvMF_0171 0.85 -0.2 188,714 + DvMF_0171 0.88 -0.5 189,163 - DvMF_0172 0.24 -0.8 189,187 - DvMF_0172 0.28 -0.5 189,297 + DvMF_0172 0.47 -0.5 189,301 - DvMF_0172 0.48 -1.3
Or see this region's nucleotide sequence