Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0072

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0070 and DvMF_0071 are separated by 15 nucleotidesDvMF_0071 and DvMF_0072 are separated by 428 nucleotidesDvMF_0072 and DvMF_0073 are separated by 122 nucleotides DvMF_0070: DvMF_0070 - Nitrate reductase gamma subunit (RefSeq), at 90,370 to 91,377 _0070 DvMF_0071: DvMF_0071 - hypothetical protein (RefSeq), at 91,393 to 91,938 _0071 DvMF_0072: DvMF_0072 - hypothetical protein (RefSeq), at 92,367 to 93,407 _0072 DvMF_0073: DvMF_0073 - protein of unknown function DUF45 (RefSeq), at 93,530 to 94,480 _0073 Position (kb) 92 93 94Strain fitness (log2 ratio) -1 0 1at 92.110 kb on + strandat 92.450 kb on - strandat 92.729 kb on - strand, within DvMF_0072at 92.736 kb on - strand, within DvMF_0072at 92.955 kb on - strand, within DvMF_0072at 93.078 kb on - strand, within DvMF_0072at 93.490 kb on - strandat 93.604 kb on - strandat 93.622 kb on + strandat 93.630 kb on - strand, within DvMF_0073at 93.768 kb on - strand, within DvMF_0073at 93.803 kb on - strand, within DvMF_0073at 94.045 kb on - strand, within DvMF_0073at 94.050 kb on - strand, within DvMF_0073at 94.128 kb on + strand, within DvMF_0073at 94.293 kb on + strand, within DvMF_0073at 94.337 kb on - strand, within DvMF_0073at 94.347 kb on + strand, within DvMF_0073at 94.351 kb on + strand, within DvMF_0073at 94.361 kb on - strand, within DvMF_0073at 94.386 kb on + strandat 94.394 kb on - strandat 94.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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92,110 + -0.5
92,450 - +0.3
92,729 - DvMF_0072 0.35 -0.0
92,736 - DvMF_0072 0.35 +0.4
92,955 - DvMF_0072 0.56 +0.3
93,078 - DvMF_0072 0.68 +0.1
93,490 - +0.2
93,604 - -0.5
93,622 + -0.5
93,630 - DvMF_0073 0.11 -0.4
93,768 - DvMF_0073 0.25 -0.7
93,803 - DvMF_0073 0.29 +0.2
94,045 - DvMF_0073 0.54 -0.2
94,050 - DvMF_0073 0.55 -0.5
94,128 + DvMF_0073 0.63 -0.2
94,293 + DvMF_0073 0.80 -0.1
94,337 - DvMF_0073 0.85 -0.7
94,347 + DvMF_0073 0.86 -0.2
94,351 + DvMF_0073 0.86 -1.0
94,361 - DvMF_0073 0.87 -0.7
94,386 + -0.8
94,394 - -0.8
94,394 - -0.4

Or see this region's nucleotide sequence