Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0054

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0053 and DvMF_0054 are separated by 264 nucleotidesDvMF_0054 and DvMF_R0007 are separated by 591 nucleotidesDvMF_R0007 and DvMF_0055 are separated by 307 nucleotides DvMF_0053: DvMF_0053 - hypothetical protein (RefSeq), at 69,339 to 70,088 _0053 DvMF_0054: DvMF_0054 - hypothetical protein (RefSeq), at 70,353 to 70,790 _0054 DvMF_R0007: DvMF_R0007 - tRNA-Sec (RefSeq), at 71,382 to 71,471 _R0007 DvMF_0055: DvMF_0055 - ATP-dependent metalloprotease FtsH (RefSeq), at 71,779 to 73,794 _0055 Position (kb) 70 71Strain fitness (log2 ratio) -1 0 1 2at 70.225 kb on - strandat 70.338 kb on - strandat 70.508 kb on + strand, within DvMF_0054at 70.549 kb on + strand, within DvMF_0054at 70.598 kb on - strand, within DvMF_0054at 70.708 kb on + strand, within DvMF_0054at 70.985 kb on + strandat 71.085 kb on + strandat 71.138 kb on + strandat 71.203 kb on - strandat 71.254 kb on + strandat 71.540 kb on - strandat 71.614 kb on - strandat 71.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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70,225 - -0.8
70,338 - -0.6
70,508 + DvMF_0054 0.35 -0.3
70,549 + DvMF_0054 0.45 +2.3
70,598 - DvMF_0054 0.56 -0.7
70,708 + DvMF_0054 0.81 +0.4
70,985 + -0.1
71,085 + -0.6
71,138 + -0.4
71,203 - -1.2
71,254 + -0.6
71,540 - -0.1
71,614 - +0.6
71,616 - -0.3

Or see this region's nucleotide sequence