Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0043 and DvMF_0044 are separated by 106 nucleotides DvMF_0044 and DvMF_0045 are separated by 152 nucleotides
DvMF_0043: DvMF_0043 - hypothetical protein (RefSeq), at 57,479 to 59,059
_0043
DvMF_0044: DvMF_0044 - Homocysteine formation from aspartate semialdehyde (COG2122 or apbE like component) (from data) , at 59,166 to 59,999
_0044
DvMF_0045: DvMF_0045 - Endonuclease/exonuclease/phosphatase (RefSeq), at 60,152 to 61,366
_0045
Position (kb)
59
60 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 58.228 kb on - strand, within DvMF_0043 at 58.314 kb on - strand, within DvMF_0043 at 58.519 kb on - strand, within DvMF_0043 at 58.759 kb on + strand, within DvMF_0043 at 58.785 kb on + strand, within DvMF_0043 at 58.795 kb on + strand, within DvMF_0043 at 58.803 kb on - strand, within DvMF_0043 at 59.116 kb on + strand at 59.159 kb on + strand at 59.172 kb on - strand at 59.373 kb on - strand, within DvMF_0044 at 59.375 kb on + strand, within DvMF_0044 at 59.455 kb on - strand, within DvMF_0044 at 59.503 kb on - strand, within DvMF_0044 at 59.929 kb on + strand at 59.931 kb on - strand at 60.083 kb on + strand at 60.254 kb on + strand at 60.268 kb on - strand at 60.268 kb on - strand at 60.349 kb on - strand, within DvMF_0045 at 60.349 kb on - strand, within DvMF_0045 at 60.349 kb on - strand, within DvMF_0045 at 60.349 kb on - strand, within DvMF_0045 at 60.356 kb on + strand, within DvMF_0045 at 60.526 kb on - strand, within DvMF_0045 at 60.579 kb on + strand, within DvMF_0045 at 60.589 kb on + strand, within DvMF_0045 at 60.616 kb on + strand, within DvMF_0045 at 60.654 kb on - strand, within DvMF_0045 at 60.654 kb on - strand, within DvMF_0045 at 60.661 kb on - strand, within DvMF_0045 at 60.899 kb on + strand, within DvMF_0045 at 60.991 kb on - strand, within DvMF_0045
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 58,228 - DvMF_0043 0.47 -0.1 58,314 - DvMF_0043 0.53 -0.1 58,519 - DvMF_0043 0.66 -0.1 58,759 + DvMF_0043 0.81 -0.1 58,785 + DvMF_0043 0.83 -0.7 58,795 + DvMF_0043 0.83 -0.3 58,803 - DvMF_0043 0.84 -0.3 59,116 + -1.1 59,159 + -0.3 59,172 - -0.1 59,373 - DvMF_0044 0.25 -5.8 59,375 + DvMF_0044 0.25 -4.8 59,455 - DvMF_0044 0.35 -3.6 59,503 - DvMF_0044 0.40 -4.4 59,929 + -1.4 59,931 - +1.7 60,083 + -0.4 60,254 + -0.4 60,268 - -0.5 60,268 - -0.1 60,349 - DvMF_0045 0.16 -0.6 60,349 - DvMF_0045 0.16 -0.5 60,349 - DvMF_0045 0.16 -0.5 60,349 - DvMF_0045 0.16 -0.3 60,356 + DvMF_0045 0.17 -0.2 60,526 - DvMF_0045 0.31 -0.6 60,579 + DvMF_0045 0.35 -0.5 60,589 + DvMF_0045 0.36 +0.0 60,616 + DvMF_0045 0.38 -0.5 60,654 - DvMF_0045 0.41 -0.7 60,654 - DvMF_0045 0.41 -0.5 60,661 - DvMF_0045 0.42 -0.4 60,899 + DvMF_0045 0.61 -0.4 60,991 - DvMF_0045 0.69 -0.0
Or see this region's nucleotide sequence