Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0109

Experiment: MoLS4 with L-Serine (N) without Molybdate/Tungstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0108 and hydH are separated by 662 nucleotideshydH and ntrC overlap by 16 nucleotides DVU0108: DVU0108 - hypothetical protein (TIGR), at 140,811 to 140,918 DVU0108 DVU0109: hydH - sensor histidine kinase (TIGR), at 141,581 to 142,687 hydH DVU0110: ntrC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 142,672 to 144,102 ntrC Position (kb) 141 142 143Strain fitness (log2 ratio) -1 0 1 2at 140.658 kb on + strandat 140.666 kb on + strandat 140.668 kb on + strandat 140.757 kb on + strandat 140.757 kb on + strandat 140.788 kb on + strandat 140.808 kb on - strandat 140.818 kb on - strandat 140.898 kb on - strand, within DVU0108at 140.898 kb on - strand, within DVU0108at 140.927 kb on - strandat 141.065 kb on + strandat 141.155 kb on + strandat 141.163 kb on - strandat 141.199 kb on - strandat 141.215 kb on + strandat 141.239 kb on + strandat 141.247 kb on - strandat 141.284 kb on + strandat 141.302 kb on - strandat 141.302 kb on - strandat 141.355 kb on - strandat 141.369 kb on - strandat 141.373 kb on + strandat 141.549 kb on + strandat 141.550 kb on + strandat 141.574 kb on - strandat 141.629 kb on - strandat 141.670 kb on - strandat 141.691 kb on - strandat 141.693 kb on + strand, within hydHat 141.697 kb on - strand, within hydHat 141.711 kb on + strand, within hydHat 141.721 kb on + strand, within hydHat 141.775 kb on + strand, within hydHat 141.783 kb on - strand, within hydHat 141.837 kb on - strand, within hydHat 141.838 kb on - strand, within hydHat 141.928 kb on + strand, within hydHat 141.928 kb on + strand, within hydHat 141.944 kb on - strand, within hydHat 142.049 kb on + strand, within hydHat 142.092 kb on + strand, within hydHat 142.100 kb on - strand, within hydHat 142.113 kb on + strand, within hydHat 142.194 kb on + strand, within hydHat 142.194 kb on + strand, within hydHat 142.202 kb on - strand, within hydHat 142.253 kb on - strand, within hydHat 142.300 kb on - strand, within hydHat 142.302 kb on + strand, within hydHat 142.316 kb on + strand, within hydHat 142.329 kb on - strand, within hydHat 142.330 kb on - strand, within hydHat 142.350 kb on - strand, within hydHat 142.357 kb on + strand, within hydHat 142.365 kb on - strand, within hydHat 142.365 kb on - strand, within hydHat 142.365 kb on - strand, within hydHat 142.393 kb on - strand, within hydHat 142.409 kb on - strand, within hydHat 142.454 kb on + strand, within hydHat 142.538 kb on + strand, within hydHat 142.551 kb on + strand, within hydHat 142.564 kb on - strand, within hydHat 142.644 kb on - strandat 142.671 kb on - strandat 142.676 kb on - strandat 142.680 kb on + strandat 142.719 kb on - strandat 142.753 kb on - strandat 142.789 kb on - strandat 142.850 kb on + strand, within ntrCat 142.850 kb on + strand, within ntrCat 142.858 kb on - strand, within ntrCat 142.894 kb on - strand, within ntrCat 142.969 kb on + strand, within ntrCat 142.990 kb on + strand, within ntrCat 142.998 kb on - strand, within ntrCat 143.007 kb on + strand, within ntrCat 143.125 kb on + strand, within ntrCat 143.247 kb on + strand, within ntrCat 143.253 kb on - strand, within ntrCat 143.255 kb on - strand, within ntrCat 143.257 kb on - strand, within ntrCat 143.287 kb on + strand, within ntrCat 143.287 kb on + strand, within ntrCat 143.293 kb on - strand, within ntrCat 143.323 kb on + strand, within ntrCat 143.341 kb on - strand, within ntrCat 143.346 kb on - strand, within ntrCat 143.357 kb on + strand, within ntrCat 143.362 kb on + strand, within ntrCat 143.365 kb on - strand, within ntrCat 143.370 kb on - strand, within ntrCat 143.433 kb on + strand, within ntrCat 143.526 kb on + strand, within ntrCat 143.565 kb on + strand, within ntrCat 143.568 kb on + strand, within ntrCat 143.571 kb on - strand, within ntrCat 143.584 kb on - strand, within ntrCat 143.584 kb on - strand, within ntrCat 143.591 kb on + strand, within ntrCat 143.638 kb on - strand, within ntrC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate/Tungstate
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140,658 + -1.4
140,666 + +0.1
140,668 + +0.1
140,757 + -1.3
140,757 + +0.2
140,788 + +0.3
140,808 - -0.2
140,818 - -0.4
140,898 - DVU0108 0.81 -0.6
140,898 - DVU0108 0.81 -0.0
140,927 - +0.1
141,065 + +0.4
141,155 + +0.1
141,163 - -0.4
141,199 - +0.1
141,215 + -0.0
141,239 + +0.1
141,247 - +1.3
141,284 + -0.1
141,302 - +0.0
141,302 - -1.1
141,355 - -0.0
141,369 - -0.5
141,373 + -0.1
141,549 + +0.3
141,550 + -0.3
141,574 - -1.2
141,629 - -0.2
141,670 - -0.6
141,691 - -0.4
141,693 + hydH DVU0109 0.10 +0.7
141,697 - hydH DVU0109 0.10 -0.7
141,711 + hydH DVU0109 0.12 -0.7
141,721 + hydH DVU0109 0.13 +1.1
141,775 + hydH DVU0109 0.18 -0.4
141,783 - hydH DVU0109 0.18 -1.0
141,837 - hydH DVU0109 0.23 -1.0
141,838 - hydH DVU0109 0.23 -0.1
141,928 + hydH DVU0109 0.31 -1.2
141,928 + hydH DVU0109 0.31 -0.3
141,944 - hydH DVU0109 0.33 -0.2
142,049 + hydH DVU0109 0.42 +2.7
142,092 + hydH DVU0109 0.46 -0.3
142,100 - hydH DVU0109 0.47 -0.7
142,113 + hydH DVU0109 0.48 -0.2
142,194 + hydH DVU0109 0.55 -0.0
142,194 + hydH DVU0109 0.55 -0.7
142,202 - hydH DVU0109 0.56 -0.6
142,253 - hydH DVU0109 0.61 -0.5
142,300 - hydH DVU0109 0.65 -0.2
142,302 + hydH DVU0109 0.65 -0.1
142,316 + hydH DVU0109 0.66 +0.9
142,329 - hydH DVU0109 0.68 -0.3
142,330 - hydH DVU0109 0.68 -0.9
142,350 - hydH DVU0109 0.69 +0.0
142,357 + hydH DVU0109 0.70 -0.4
142,365 - hydH DVU0109 0.71 -0.4
142,365 - hydH DVU0109 0.71 -0.4
142,365 - hydH DVU0109 0.71 -0.9
142,393 - hydH DVU0109 0.73 -0.2
142,409 - hydH DVU0109 0.75 +0.4
142,454 + hydH DVU0109 0.79 -0.4
142,538 + hydH DVU0109 0.86 +0.5
142,551 + hydH DVU0109 0.88 +0.7
142,564 - hydH DVU0109 0.89 -0.3
142,644 - +0.8
142,671 - +0.1
142,676 - +0.8
142,680 + +0.2
142,719 - -0.7
142,753 - -0.4
142,789 - -1.5
142,850 + ntrC DVU0110 0.12 +0.2
142,850 + ntrC DVU0110 0.12 -0.3
142,858 - ntrC DVU0110 0.13 +1.5
142,894 - ntrC DVU0110 0.16 -0.2
142,969 + ntrC DVU0110 0.21 -0.9
142,990 + ntrC DVU0110 0.22 -1.1
142,998 - ntrC DVU0110 0.23 -0.2
143,007 + ntrC DVU0110 0.23 -0.2
143,125 + ntrC DVU0110 0.32 -0.9
143,247 + ntrC DVU0110 0.40 +0.3
143,253 - ntrC DVU0110 0.41 +0.2
143,255 - ntrC DVU0110 0.41 -0.1
143,257 - ntrC DVU0110 0.41 -0.1
143,287 + ntrC DVU0110 0.43 -1.5
143,287 + ntrC DVU0110 0.43 -0.1
143,293 - ntrC DVU0110 0.43 -0.3
143,323 + ntrC DVU0110 0.45 -0.1
143,341 - ntrC DVU0110 0.47 +0.8
143,346 - ntrC DVU0110 0.47 -0.3
143,357 + ntrC DVU0110 0.48 +0.5
143,362 + ntrC DVU0110 0.48 -0.6
143,365 - ntrC DVU0110 0.48 -0.7
143,370 - ntrC DVU0110 0.49 -1.0
143,433 + ntrC DVU0110 0.53 -0.1
143,526 + ntrC DVU0110 0.60 -0.5
143,565 + ntrC DVU0110 0.62 +0.5
143,568 + ntrC DVU0110 0.63 +0.1
143,571 - ntrC DVU0110 0.63 -0.5
143,584 - ntrC DVU0110 0.64 -0.2
143,584 - ntrC DVU0110 0.64 +1.1
143,591 + ntrC DVU0110 0.64 +0.5
143,638 - ntrC DVU0110 0.68 -0.3

Or see this region's nucleotide sequence