Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1859 and ycf29 overlap by 12 nucleotides ycf29 and natB are separated by 157 nucleotides natB and Synpcc7942_1862 are separated by 159 nucleotides
Synpcc7942_1859: Synpcc7942_1859 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,927,733 to 1,930,486
_1859
Synpcc7942_1860: ycf29 - two component transcriptional regulator, LuxR family, at 1,930,475 to 1,931,182
ycf29
Synpcc7942_1861: natB - periplasmic binding protein of ABC transporter for natural amino acids, at 1,931,340 to 1,932,605
natB
Synpcc7942_1862: Synpcc7942_1862 - hypothetical protein, at 1,932,765 to 1,933,688
_1862
Position (kb) 1931
1932
1933 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1930.353 kb on + strand at 1930.418 kb on - strand at 1930.478 kb on + strand at 1931.194 kb on + strand at 1931.194 kb on + strand at 1931.196 kb on + strand at 1931.200 kb on - strand at 1931.202 kb on - strand at 1931.233 kb on - strand at 1931.241 kb on + strand at 1931.248 kb on - strand at 1931.248 kb on - strand at 1931.248 kb on - strand at 1931.248 kb on - strand at 1931.260 kb on - strand at 1931.279 kb on + strand at 1931.281 kb on - strand at 1931.287 kb on - strand at 1931.293 kb on - strand at 1931.298 kb on + strand at 1931.306 kb on - strand at 1931.320 kb on + strand at 1931.350 kb on - strand at 1931.350 kb on - strand at 1931.364 kb on - strand at 1931.364 kb on - strand at 1931.398 kb on + strand at 1931.407 kb on - strand at 1931.417 kb on - strand at 1931.464 kb on - strand at 1931.464 kb on - strand at 1931.484 kb on + strand, within natB at 1931.490 kb on + strand, within natB at 1931.491 kb on + strand, within natB at 1931.492 kb on - strand, within natB at 1931.492 kb on - strand, within natB at 1931.496 kb on + strand, within natB at 1931.497 kb on - strand, within natB at 1931.505 kb on - strand, within natB at 1931.536 kb on - strand, within natB at 1931.553 kb on + strand, within natB at 1931.553 kb on + strand, within natB at 1931.559 kb on - strand, within natB at 1931.570 kb on - strand, within natB at 1931.578 kb on + strand, within natB at 1931.591 kb on - strand at 1931.595 kb on + strand, within natB at 1931.602 kb on + strand, within natB at 1931.682 kb on - strand, within natB at 1931.717 kb on - strand, within natB at 1931.746 kb on - strand, within natB at 1931.748 kb on + strand, within natB at 1931.755 kb on + strand, within natB at 1931.756 kb on - strand, within natB at 1931.756 kb on - strand, within natB at 1931.761 kb on + strand, within natB at 1931.778 kb on - strand, within natB at 1931.788 kb on + strand, within natB at 1931.790 kb on + strand, within natB at 1931.790 kb on + strand, within natB at 1931.796 kb on - strand, within natB at 1931.798 kb on - strand, within natB at 1931.811 kb on + strand, within natB at 1931.825 kb on + strand, within natB at 1931.834 kb on - strand, within natB at 1931.840 kb on - strand, within natB at 1931.887 kb on + strand, within natB at 1931.899 kb on + strand, within natB at 1931.899 kb on + strand, within natB at 1931.932 kb on - strand, within natB at 1931.937 kb on + strand, within natB at 1931.945 kb on - strand, within natB at 1931.949 kb on + strand, within natB at 1931.951 kb on + strand, within natB at 1931.956 kb on + strand, within natB at 1931.959 kb on + strand, within natB at 1931.959 kb on - strand, within natB at 1931.961 kb on + strand, within natB at 1931.964 kb on - strand, within natB at 1931.967 kb on - strand, within natB at 1931.982 kb on + strand, within natB at 1931.990 kb on - strand, within natB at 1932.003 kb on - strand at 1932.005 kb on + strand at 1932.013 kb on - strand, within natB at 1932.035 kb on + strand, within natB at 1932.038 kb on - strand, within natB at 1932.066 kb on + strand, within natB at 1932.074 kb on - strand, within natB at 1932.085 kb on + strand, within natB at 1932.118 kb on - strand, within natB at 1932.118 kb on - strand, within natB at 1932.118 kb on - strand, within natB at 1932.123 kb on - strand, within natB at 1932.128 kb on + strand, within natB at 1932.132 kb on + strand, within natB at 1932.132 kb on + strand, within natB at 1932.191 kb on + strand, within natB at 1932.224 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.231 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.246 kb on + strand, within natB at 1932.247 kb on - strand, within natB at 1932.254 kb on - strand, within natB at 1932.254 kb on - strand, within natB at 1932.255 kb on - strand, within natB at 1932.260 kb on - strand, within natB at 1932.271 kb on - strand, within natB at 1932.298 kb on - strand, within natB at 1932.307 kb on + strand, within natB at 1932.316 kb on + strand, within natB at 1932.329 kb on - strand, within natB at 1932.352 kb on + strand, within natB at 1932.382 kb on + strand, within natB at 1932.387 kb on + strand, within natB at 1932.387 kb on + strand, within natB at 1932.395 kb on - strand, within natB at 1932.395 kb on - strand, within natB at 1932.405 kb on + strand, within natB at 1932.405 kb on + strand, within natB at 1932.405 kb on + strand, within natB at 1932.423 kb on + strand, within natB at 1932.428 kb on + strand, within natB at 1932.428 kb on + strand, within natB at 1932.438 kb on + strand, within natB at 1932.446 kb on - strand, within natB at 1932.446 kb on - strand, within natB at 1932.446 kb on - strand, within natB at 1932.461 kb on - strand, within natB at 1932.496 kb on + strand at 1932.505 kb on - strand at 1932.514 kb on - strand at 1932.549 kb on + strand at 1932.557 kb on + strand at 1932.560 kb on + strand at 1932.560 kb on - strand at 1932.562 kb on + strand at 1932.570 kb on - strand at 1932.580 kb on - strand at 1932.580 kb on - strand at 1932.610 kb on - strand at 1932.611 kb on + strand at 1932.611 kb on + strand at 1932.619 kb on - strand at 1932.628 kb on + strand at 1932.644 kb on + strand at 1932.696 kb on + strand at 1932.696 kb on + strand at 1932.707 kb on + strand at 1932.707 kb on + strand at 1932.715 kb on - strand at 1932.719 kb on + strand at 1932.726 kb on + strand at 1932.727 kb on - strand at 1932.817 kb on - strand at 1932.835 kb on - strand at 1932.892 kb on - strand, within Synpcc7942_1862 at 1932.902 kb on - strand, within Synpcc7942_1862 at 1932.927 kb on - strand, within Synpcc7942_1862 at 1933.126 kb on + strand, within Synpcc7942_1862 at 1933.141 kb on - strand, within Synpcc7942_1862 at 1933.402 kb on - strand, within Synpcc7942_1862 at 1933.449 kb on + strand, within Synpcc7942_1862 at 1933.487 kb on + strand, within Synpcc7942_1862 at 1933.565 kb on + strand, within Synpcc7942_1862
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 1,930,353 + -1.3 1,930,418 - -0.4 1,930,478 + -2.8 1,931,194 + +0.1 1,931,194 + -0.2 1,931,196 + +1.1 1,931,200 - +0.8 1,931,202 - +0.0 1,931,233 - +0.4 1,931,241 + +0.1 1,931,248 - +0.4 1,931,248 - -0.2 1,931,248 - +0.1 1,931,248 - +0.1 1,931,260 - +1.4 1,931,279 + +0.7 1,931,281 - -0.6 1,931,287 - -1.9 1,931,293 - -0.9 1,931,298 + +0.4 1,931,306 - -1.4 1,931,320 + -0.7 1,931,350 - +1.1 1,931,350 - -0.1 1,931,364 - -0.3 1,931,364 - +0.4 1,931,398 + -1.4 1,931,407 - +0.5 1,931,417 - -1.7 1,931,464 - +0.9 1,931,464 - +0.3 1,931,484 + natB Synpcc7942_1861 0.11 +0.4 1,931,490 + natB Synpcc7942_1861 0.12 -0.5 1,931,491 + natB Synpcc7942_1861 0.12 +0.2 1,931,492 - natB Synpcc7942_1861 0.12 +0.5 1,931,492 - natB Synpcc7942_1861 0.12 -0.2 1,931,496 + natB Synpcc7942_1861 0.12 -0.7 1,931,497 - natB Synpcc7942_1861 0.12 +0.2 1,931,505 - natB Synpcc7942_1861 0.13 +0.2 1,931,536 - natB Synpcc7942_1861 0.15 +1.0 1,931,553 + natB Synpcc7942_1861 0.17 -0.1 1,931,553 + natB Synpcc7942_1861 0.17 -1.0 1,931,559 - natB Synpcc7942_1861 0.17 +0.4 1,931,570 - natB Synpcc7942_1861 0.18 -0.8 1,931,578 + natB Synpcc7942_1861 0.19 +0.8 1,931,591 - -0.4 1,931,595 + natB Synpcc7942_1861 0.20 +0.6 1,931,602 + natB Synpcc7942_1861 0.21 +1.1 1,931,682 - natB Synpcc7942_1861 0.27 -0.3 1,931,717 - natB Synpcc7942_1861 0.30 -0.2 1,931,746 - natB Synpcc7942_1861 0.32 +0.4 1,931,748 + natB Synpcc7942_1861 0.32 +0.0 1,931,755 + natB Synpcc7942_1861 0.33 +0.6 1,931,756 - natB Synpcc7942_1861 0.33 -1.1 1,931,756 - natB Synpcc7942_1861 0.33 -0.6 1,931,761 + natB Synpcc7942_1861 0.33 -0.6 1,931,778 - natB Synpcc7942_1861 0.35 +0.8 1,931,788 + natB Synpcc7942_1861 0.35 -0.7 1,931,790 + natB Synpcc7942_1861 0.36 -1.0 1,931,790 + natB Synpcc7942_1861 0.36 -0.9 1,931,796 - natB Synpcc7942_1861 0.36 +1.1 1,931,798 - natB Synpcc7942_1861 0.36 -0.0 1,931,811 + natB Synpcc7942_1861 0.37 -0.9 1,931,825 + natB Synpcc7942_1861 0.38 -1.6 1,931,834 - natB Synpcc7942_1861 0.39 +1.9 1,931,840 - natB Synpcc7942_1861 0.39 +0.2 1,931,887 + natB Synpcc7942_1861 0.43 +0.1 1,931,899 + natB Synpcc7942_1861 0.44 -1.0 1,931,899 + natB Synpcc7942_1861 0.44 -0.6 1,931,932 - natB Synpcc7942_1861 0.47 -1.6 1,931,937 + natB Synpcc7942_1861 0.47 +0.2 1,931,945 - natB Synpcc7942_1861 0.48 +0.8 1,931,949 + natB Synpcc7942_1861 0.48 +0.1 1,931,951 + natB Synpcc7942_1861 0.48 -0.6 1,931,956 + natB Synpcc7942_1861 0.49 -2.1 1,931,959 + natB Synpcc7942_1861 0.49 -1.5 1,931,959 - natB Synpcc7942_1861 0.49 -1.9 1,931,961 + natB Synpcc7942_1861 0.49 +1.0 1,931,964 - natB Synpcc7942_1861 0.49 +1.0 1,931,967 - natB Synpcc7942_1861 0.50 +1.9 1,931,982 + natB Synpcc7942_1861 0.51 +1.1 1,931,990 - natB Synpcc7942_1861 0.51 +1.2 1,932,003 - +0.6 1,932,005 + -0.2 1,932,013 - natB Synpcc7942_1861 0.53 +0.7 1,932,035 + natB Synpcc7942_1861 0.55 +1.5 1,932,038 - natB Synpcc7942_1861 0.55 +0.1 1,932,066 + natB Synpcc7942_1861 0.57 -0.8 1,932,074 - natB Synpcc7942_1861 0.58 -0.8 1,932,085 + natB Synpcc7942_1861 0.59 -0.3 1,932,118 - natB Synpcc7942_1861 0.61 -0.0 1,932,118 - natB Synpcc7942_1861 0.61 +0.2 1,932,118 - natB Synpcc7942_1861 0.61 +0.6 1,932,123 - natB Synpcc7942_1861 0.62 -0.1 1,932,128 + natB Synpcc7942_1861 0.62 +0.7 1,932,132 + natB Synpcc7942_1861 0.63 -1.4 1,932,132 + natB Synpcc7942_1861 0.63 +0.0 1,932,191 + natB Synpcc7942_1861 0.67 +0.8 1,932,224 + natB Synpcc7942_1861 0.70 -0.2 1,932,231 + natB Synpcc7942_1861 0.70 -0.9 1,932,231 + natB Synpcc7942_1861 0.70 +0.6 1,932,231 + natB Synpcc7942_1861 0.70 +1.0 1,932,231 + natB Synpcc7942_1861 0.70 +0.7 1,932,246 + natB Synpcc7942_1861 0.72 -1.4 1,932,246 + natB Synpcc7942_1861 0.72 -0.6 1,932,246 + natB Synpcc7942_1861 0.72 -1.6 1,932,246 + natB Synpcc7942_1861 0.72 +1.1 1,932,246 + natB Synpcc7942_1861 0.72 +0.3 1,932,246 + natB Synpcc7942_1861 0.72 -1.0 1,932,246 + natB Synpcc7942_1861 0.72 +0.4 1,932,246 + natB Synpcc7942_1861 0.72 -1.4 1,932,247 - natB Synpcc7942_1861 0.72 +1.1 1,932,254 - natB Synpcc7942_1861 0.72 +0.8 1,932,254 - natB Synpcc7942_1861 0.72 +0.4 1,932,255 - natB Synpcc7942_1861 0.72 -0.9 1,932,260 - natB Synpcc7942_1861 0.73 -0.8 1,932,271 - natB Synpcc7942_1861 0.74 +1.4 1,932,298 - natB Synpcc7942_1861 0.76 -2.6 1,932,307 + natB Synpcc7942_1861 0.76 +0.7 1,932,316 + natB Synpcc7942_1861 0.77 +1.7 1,932,329 - natB Synpcc7942_1861 0.78 +0.4 1,932,352 + natB Synpcc7942_1861 0.80 -4.2 1,932,382 + natB Synpcc7942_1861 0.82 -1.3 1,932,387 + natB Synpcc7942_1861 0.83 +0.8 1,932,387 + natB Synpcc7942_1861 0.83 -0.6 1,932,395 - natB Synpcc7942_1861 0.83 -0.6 1,932,395 - natB Synpcc7942_1861 0.83 -0.1 1,932,405 + natB Synpcc7942_1861 0.84 +0.3 1,932,405 + natB Synpcc7942_1861 0.84 +1.4 1,932,405 + natB Synpcc7942_1861 0.84 -1.3 1,932,423 + natB Synpcc7942_1861 0.86 -0.8 1,932,428 + natB Synpcc7942_1861 0.86 +1.1 1,932,428 + natB Synpcc7942_1861 0.86 +0.5 1,932,438 + natB Synpcc7942_1861 0.87 -0.3 1,932,446 - natB Synpcc7942_1861 0.87 +0.5 1,932,446 - natB Synpcc7942_1861 0.87 -0.7 1,932,446 - natB Synpcc7942_1861 0.87 +1.2 1,932,461 - natB Synpcc7942_1861 0.89 -0.0 1,932,496 + -0.1 1,932,505 - +0.8 1,932,514 - +0.7 1,932,549 + +0.0 1,932,557 + -0.3 1,932,560 + -1.2 1,932,560 - -0.4 1,932,562 + -1.3 1,932,570 - -1.1 1,932,580 - +1.1 1,932,580 - -0.0 1,932,610 - +0.8 1,932,611 + -0.5 1,932,611 + +0.5 1,932,619 - +0.1 1,932,628 + +0.1 1,932,644 + -0.6 1,932,696 + -0.9 1,932,696 + -2.5 1,932,707 + -0.3 1,932,707 + +0.1 1,932,715 - -0.0 1,932,719 + -1.9 1,932,726 + -0.1 1,932,727 - +1.1 1,932,817 - -2.3 1,932,835 - -2.4 1,932,892 - Synpcc7942_1862 0.14 -0.5 1,932,902 - Synpcc7942_1862 0.15 -1.1 1,932,927 - Synpcc7942_1862 0.18 -1.6 1,933,126 + Synpcc7942_1862 0.39 -2.0 1,933,141 - Synpcc7942_1862 0.41 -1.0 1,933,402 - Synpcc7942_1862 0.69 -0.4 1,933,449 + Synpcc7942_1862 0.74 +0.6 1,933,487 + Synpcc7942_1862 0.78 +0.4 1,933,565 + Synpcc7942_1862 0.87 -0.6
Or see this region's nucleotide sequence