Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1201

Experiment: BG11 with nitrite 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with nitrite 20 mM
1,228,079	-				+0.9
1,228,082	+				+1.3
1,228,082	+				-2.4
1,228,082	+				-0.9
1,228,082	+				-1.1
1,228,082	+				-2.5
1,228,084	-				+0.7
1,228,084	-				-1.3
1,228,090	-				-0.3
1,228,090	-				-2.3
1,228,092	-				-2.0
1,228,116	+				-0.6
1,228,132	+				-0.1
1,228,145	-				+1.4
1,228,234	+		Synpcc7942_1200	0.18	-1.4
1,228,263	+		Synpcc7942_1200	0.21	-2.9
1,228,279	+		Synpcc7942_1200	0.23	-1.2
1,228,292	+		Synpcc7942_1200	0.24	-2.1
1,228,293	-		Synpcc7942_1200	0.24	+0.1
1,228,311	-		Synpcc7942_1200	0.26	-0.2
1,228,405	-		Synpcc7942_1200	0.35	-1.0
1,228,462	+		Synpcc7942_1200	0.41	-0.9
1,228,470	-		Synpcc7942_1200	0.42	-0.2
1,228,483	+		Synpcc7942_1200	0.43	-2.1
1,228,483	+		Synpcc7942_1200	0.43	-1.7
1,228,483	+		Synpcc7942_1200	0.43	-2.1
1,228,483	+		Synpcc7942_1200	0.43	-1.6
1,228,483	+		Synpcc7942_1200	0.43	-0.9
1,228,483	+		Synpcc7942_1200	0.43	-1.4
1,228,491	-		Synpcc7942_1200	0.44	-2.5
1,228,491	-		Synpcc7942_1200	0.44	-0.1
1,228,491	-		Synpcc7942_1200	0.44	+0.4
1,228,491	-		Synpcc7942_1200	0.44	-1.4
1,228,534	-		Synpcc7942_1200	0.48	-1.6
1,228,558	+		Synpcc7942_1200	0.50	-0.3
1,228,563	+		Synpcc7942_1200	0.51	-2.2
1,228,571	-		Synpcc7942_1200	0.52	-2.0
1,228,581	+		Synpcc7942_1200	0.53	+0.4
1,228,597	+		Synpcc7942_1200	0.54	-1.4
1,228,603	+		Synpcc7942_1200	0.55	-2.4
1,228,610	-		Synpcc7942_1200	0.55	+0.0
1,228,642	+		Synpcc7942_1200	0.59	-3.7
1,228,656	+		Synpcc7942_1200	0.60	-1.7
1,228,656	+		Synpcc7942_1200	0.60	-1.6
1,228,661	+		Synpcc7942_1200	0.60	-0.8
1,228,661	+		Synpcc7942_1200	0.60	-0.6
1,228,661	+		Synpcc7942_1200	0.60	-1.6
1,228,662	-		Synpcc7942_1200	0.61	-0.2
1,228,664	-		Synpcc7942_1200	0.61	-0.5
1,228,664	-		Synpcc7942_1200	0.61	-3.2
1,228,729	+		Synpcc7942_1200	0.67	-1.8
1,228,776	+		Synpcc7942_1200	0.72	-3.2
1,228,776	+		Synpcc7942_1200	0.72	-0.6
1,228,799	-		Synpcc7942_1200	0.74	-1.2
1,228,811	-		Synpcc7942_1200	0.75	-1.4
1,228,811	-		Synpcc7942_1200	0.75	-1.6
1,228,863	+		Synpcc7942_1200	0.80	-0.8
1,228,879	-		Synpcc7942_1200	0.82	-1.5
1,228,879	-		Synpcc7942_1200	0.82	-1.6
1,228,884	-		Synpcc7942_1200	0.82	-0.7
1,228,903	-		Synpcc7942_1200	0.84	-1.6
1,228,903	-		Synpcc7942_1200	0.84	-2.4
1,228,905	-		Synpcc7942_1200	0.85	-0.7
1,228,966	-				-2.6
1,228,971	+				-0.7
1,228,976	+				+0.5
1,228,979	-				-2.0
1,229,007	+				-0.5
1,229,030	-				-1.5
1,229,039	+				+0.4
1,229,040	-				+0.3
1,229,041	-				-0.1
1,229,046	+				-0.4
1,229,049	-				+0.9
1,229,052	-				-1.7
1,229,056	+				+0.8
1,229,056	+				-0.7
1,229,056	+				+0.2
1,229,056	+				+1.5
1,229,064	-				+0.6
1,229,064	-				-0.4
1,229,069	-				-0.9
1,229,074	+				+0.3
1,229,125	-				-1.4
1,229,146	+				-1.4
1,229,154	-				-3.3
1,229,179	+				-1.9
1,229,246	-		Synpcc7942_1201	0.12	-2.3
1,229,307	+		Synpcc7942_1201	0.16	-0.7
1,229,325	-		Synpcc7942_1201	0.17	-2.9
1,229,337	-		Synpcc7942_1201	0.18	-3.1
1,229,377	+		Synpcc7942_1201	0.21	-0.1
1,229,400	+		Synpcc7942_1201	0.23	-3.3
1,229,518	+		Synpcc7942_1201	0.31	-2.0
1,229,524	+		Synpcc7942_1201	0.31	-2.0
1,229,566	-		Synpcc7942_1201	0.34	-2.0
1,229,588	+		Synpcc7942_1201	0.36	-1.4
1,229,588	+		Synpcc7942_1201	0.36	-2.3
1,229,588	+		Synpcc7942_1201	0.36	-2.4
1,229,588	+		Synpcc7942_1201	0.36	-2.5
1,229,588	+		Synpcc7942_1201	0.36	-3.8
1,229,596	-		Synpcc7942_1201	0.36	-1.9
1,229,596	-		Synpcc7942_1201	0.36	-0.5
1,229,634	+		Synpcc7942_1201	0.39	-2.7
1,229,640	-		Synpcc7942_1201	0.39	-2.0
1,229,642	-		Synpcc7942_1201	0.39	-1.0
1,229,652	-		Synpcc7942_1201	0.40	-3.3
1,229,675	-		Synpcc7942_1201	0.42	-0.8
1,229,702	+		Synpcc7942_1201	0.44	-2.2
1,229,707	+		Synpcc7942_1201	0.44	-0.8
1,229,710	-		Synpcc7942_1201	0.44	-3.2
1,229,725	+		Synpcc7942_1201	0.45	-2.2
1,229,725	-		Synpcc7942_1201	0.45	-3.1
1,229,728	-		Synpcc7942_1201	0.45	-4.2
1,229,838	+		Synpcc7942_1201	0.53	-1.7
1,229,860	+		Synpcc7942_1201	0.55	-1.1
1,229,869	+		Synpcc7942_1201	0.55	-2.5
1,229,947	-		Synpcc7942_1201	0.61	-1.0
1,229,994	-		Synpcc7942_1201	0.64	-0.9
1,229,998	-		Synpcc7942_1201	0.64	-2.1
1,230,014	+		Synpcc7942_1201	0.65	-2.1
1,230,097	-		Synpcc7942_1201	0.71	-1.9
1,230,097	-		Synpcc7942_1201	0.71	-1.4
1,230,125	-		Synpcc7942_1201	0.73	+0.0
1,230,125	-		Synpcc7942_1201	0.73	-3.9
1,230,135	-		Synpcc7942_1201	0.74	-1.7
1,230,146	-		Synpcc7942_1201	0.75	-2.2
1,230,211	+		Synpcc7942_1201	0.79	-1.7
1,230,253	+				-0.2
1,230,261	-		Synpcc7942_1201	0.83	-0.7
1,230,263	+		Synpcc7942_1201	0.83	-1.9
1,230,330	-		Synpcc7942_1201	0.87	-0.5
1,230,344	+		Synpcc7942_1201	0.88	-4.1
1,230,349	+		Synpcc7942_1201	0.89	-2.3
1,230,352	-		Synpcc7942_1201	0.89	-4.7
1,230,352	-		Synpcc7942_1201	0.89	-2.3
1,230,370	+				-3.8
1,230,459	+				-1.4
1,230,510	+				+1.8
1,230,516	-				+1.3
1,230,518	-				+1.3
1,230,553	+				-0.6
1,230,553	+				-0.5
1,230,557	+				+0.3
1,230,557	+				-0.7
1,230,561	-				+0.7
1,230,561	-				-0.8
1,230,561	-				-0.4
1,230,561	-				-1.8
1,230,561	-				-0.0
1,230,562	+				+0.3
1,230,570	-				-0.3
1,230,606	+				-0.7
1,230,611	+				-1.2
1,230,619	-				+0.8
1,230,619	-				+0.8
1,230,623	+				-0.9
1,230,643	-				-0.1
1,230,663	-				+0.4
1,230,670	+				-0.4
1,230,675	-				-1.5
1,230,678	-				-1.0
1,230,687	+				-0.2
1,230,708	+				-1.2
1,230,717	+				-1.1
1,230,717	+				+0.3
1,230,738	+				-0.5
1,230,743	+				-2.2
1,230,768	+		Synpcc7942_1202	0.10	-0.2
1,230,768	+		Synpcc7942_1202	0.10	-0.3
1,230,787	+		Synpcc7942_1202	0.11	+0.6
1,230,787	+		Synpcc7942_1202	0.11	-1.8
1,230,795	-		Synpcc7942_1202	0.11	-0.7
1,230,851	+		Synpcc7942_1202	0.14	+0.0
1,230,855	+		Synpcc7942_1202	0.14	+0.1
1,230,855	+		Synpcc7942_1202	0.14	-2.0
1,230,863	-		Synpcc7942_1202	0.14	+0.5
1,230,863	-		Synpcc7942_1202	0.14	-1.7
1,230,863	-		Synpcc7942_1202	0.14	-1.2
1,230,873	-		Synpcc7942_1202	0.15	+0.1
1,230,895	+		Synpcc7942_1202	0.16	+0.6
1,230,922	-		Synpcc7942_1202	0.17	+1.0
1,230,922	-		Synpcc7942_1202	0.17	-1.6
1,230,924	+		Synpcc7942_1202	0.17	-0.4
1,230,924	+		Synpcc7942_1202	0.17	-0.4
1,230,924	+		Synpcc7942_1202	0.17	+1.6
1,230,924	+		Synpcc7942_1202	0.17	-1.8
1,230,924	+		Synpcc7942_1202	0.17	-0.4
1,230,924	+		Synpcc7942_1202	0.17	-0.7
1,230,926	+		Synpcc7942_1202	0.17	-1.2
1,230,932	-		Synpcc7942_1202	0.17	-0.0
1,230,932	-		Synpcc7942_1202	0.17	-1.7
1,230,932	-		Synpcc7942_1202	0.17	-0.7
1,230,932	-		Synpcc7942_1202	0.17	-1.5
1,230,934	-		Synpcc7942_1202	0.17	-0.5
1,230,934	-		Synpcc7942_1202	0.17	+1.7
1,230,934	-		Synpcc7942_1202	0.17	+0.1
1,230,936	+		Synpcc7942_1202	0.17	-0.1
1,230,937	+		Synpcc7942_1202	0.17	-0.5
1,230,944	-		Synpcc7942_1202	0.17	-1.7
1,230,944	-		Synpcc7942_1202	0.17	+0.3
1,230,954	+		Synpcc7942_1202	0.18	-0.4
1,231,036	-		Synpcc7942_1202	0.21	-1.2
1,231,078	+		Synpcc7942_1202	0.23	-1.7
1,231,081	+		Synpcc7942_1202	0.23	-0.8
1,231,103	+		Synpcc7942_1202	0.24	-0.7
1,231,103	-		Synpcc7942_1202	0.24	+0.5
1,231,126	-		Synpcc7942_1202	0.25	+0.1
1,231,148	+		Synpcc7942_1202	0.26	-1.8
1,231,155	+		Synpcc7942_1202	0.26	-0.9
1,231,155	+		Synpcc7942_1202	0.26	-1.8
1,231,156	-		Synpcc7942_1202	0.26	-1.2
1,231,156	-		Synpcc7942_1202	0.26	-1.4
1,231,163	-		Synpcc7942_1202	0.26	-2.4
1,231,163	-		Synpcc7942_1202	0.26	+0.2
1,231,166	+		Synpcc7942_1202	0.26	-1.1
1,231,169	-		Synpcc7942_1202	0.27	-0.7
1,231,174	-		Synpcc7942_1202	0.27	+1.0
1,231,175	+		Synpcc7942_1202	0.27	-0.7
1,231,191	+		Synpcc7942_1202	0.28	-1.5
1,231,223	+		Synpcc7942_1202	0.29	-0.5
1,231,236	+		Synpcc7942_1202	0.29	-2.7
1,231,275	-		Synpcc7942_1202	0.31	-2.6
1,231,275	-		Synpcc7942_1202	0.31	-0.1
1,231,300	+		Synpcc7942_1202	0.32	-0.3
1,231,314	+		Synpcc7942_1202	0.32	-0.1
1,231,315	-		Synpcc7942_1202	0.33	-2.9
1,231,339	+		Synpcc7942_1202	0.33	-0.7
1,231,339	+		Synpcc7942_1202	0.33	-0.3
1,231,347	+		Synpcc7942_1202	0.34	-0.8
1,231,349	+		Synpcc7942_1202	0.34	+1.1
1,231,370	+		Synpcc7942_1202	0.35	-0.3
1,231,370	-		Synpcc7942_1202	0.35	+0.6
1,231,378	-		Synpcc7942_1202	0.35	-2.4
1,231,378	-		Synpcc7942_1202	0.35	+0.3
1,231,378	-		Synpcc7942_1202	0.35	-0.5
1,231,378	-		Synpcc7942_1202	0.35	+0.8
1,231,393	+		Synpcc7942_1202	0.36	+0.4
1,231,411	-		Synpcc7942_1202	0.36	-1.9
1,231,447	-		Synpcc7942_1202	0.38	-1.2
1,231,469	-		Synpcc7942_1202	0.39	+0.2
1,231,478	+		Synpcc7942_1202	0.39	-1.7
1,231,488	+		Synpcc7942_1202	0.40	-0.5