Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0838 and merR overlap by 8 nucleotides merR and Synpcc7942_0840 are separated by 36 nucleotides Synpcc7942_0840 and Synpcc7942_0841 are separated by 197 nucleotides
Synpcc7942_0838: Synpcc7942_0838 - Elongator protein 3/MiaB/NifB, at 832,860 to 833,957
_0838
Synpcc7942_0839: merR - Nitrilase, at 833,950 to 834,954
merR
Synpcc7942_0840: Synpcc7942_0840 - hypothetical protein, at 834,991 to 835,473
_0840
Synpcc7942_0841: Synpcc7942_0841 - putative flavoprotein involved in K+ transport, at 835,671 to 837,011
_0841
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 832.952 kb on - strand at 832.953 kb on + strand at 832.961 kb on - strand at 832.961 kb on - strand at 832.984 kb on - strand, within Synpcc7942_0838 at 833.051 kb on + strand, within Synpcc7942_0838 at 833.097 kb on - strand, within Synpcc7942_0838 at 833.114 kb on - strand, within Synpcc7942_0838 at 833.160 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.179 kb on + strand, within Synpcc7942_0838 at 833.184 kb on - strand, within Synpcc7942_0838 at 833.197 kb on - strand, within Synpcc7942_0838 at 833.242 kb on - strand, within Synpcc7942_0838 at 833.269 kb on + strand, within Synpcc7942_0838 at 833.279 kb on - strand, within Synpcc7942_0838 at 833.284 kb on - strand, within Synpcc7942_0838 at 833.292 kb on - strand, within Synpcc7942_0838 at 833.299 kb on + strand, within Synpcc7942_0838 at 833.304 kb on + strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.308 kb on + strand, within Synpcc7942_0838 at 833.320 kb on + strand, within Synpcc7942_0838 at 833.326 kb on + strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.338 kb on - strand, within Synpcc7942_0838 at 833.346 kb on + strand, within Synpcc7942_0838 at 833.359 kb on - strand, within Synpcc7942_0838 at 833.364 kb on - strand, within Synpcc7942_0838 at 833.382 kb on + strand, within Synpcc7942_0838 at 833.407 kb on + strand, within Synpcc7942_0838 at 833.417 kb on + strand, within Synpcc7942_0838 at 833.425 kb on + strand, within Synpcc7942_0838 at 833.433 kb on - strand, within Synpcc7942_0838 at 833.446 kb on - strand, within Synpcc7942_0838 at 833.474 kb on + strand, within Synpcc7942_0838 at 833.486 kb on + strand, within Synpcc7942_0838 at 833.492 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.509 kb on + strand, within Synpcc7942_0838 at 833.537 kb on - strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.586 kb on + strand, within Synpcc7942_0838 at 833.594 kb on + strand, within Synpcc7942_0838 at 833.601 kb on + strand, within Synpcc7942_0838 at 833.613 kb on - strand, within Synpcc7942_0838 at 833.614 kb on + strand, within Synpcc7942_0838 at 833.637 kb on - strand, within Synpcc7942_0838 at 833.651 kb on + strand, within Synpcc7942_0838 at 833.659 kb on + strand, within Synpcc7942_0838 at 833.712 kb on - strand, within Synpcc7942_0838 at 833.739 kb on - strand, within Synpcc7942_0838 at 833.762 kb on + strand, within Synpcc7942_0838 at 833.809 kb on + strand, within Synpcc7942_0838 at 833.817 kb on - strand, within Synpcc7942_0838 at 833.846 kb on + strand, within Synpcc7942_0838 at 833.856 kb on + strand at 833.927 kb on + strand at 833.927 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.933 kb on - strand at 833.935 kb on - strand at 833.935 kb on - strand at 833.935 kb on - strand at 833.953 kb on + strand at 833.960 kb on + strand at 833.961 kb on - strand at 833.961 kb on - strand at 833.968 kb on - strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.983 kb on - strand at 833.983 kb on - strand at 833.983 kb on - strand at 833.993 kb on - strand at 833.998 kb on - strand at 834.029 kb on - strand at 834.054 kb on - strand, within merR at 834.066 kb on + strand, within merR at 834.071 kb on + strand, within merR at 834.074 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.107 kb on - strand, within merR at 834.132 kb on - strand, within merR at 834.189 kb on - strand, within merR at 834.202 kb on - strand, within merR at 834.204 kb on + strand, within merR at 834.204 kb on + strand, within merR at 834.212 kb on - strand, within merR at 834.212 kb on - strand, within merR at 834.217 kb on - strand, within merR at 834.222 kb on - strand, within merR at 834.226 kb on + strand, within merR at 834.246 kb on - strand, within merR at 834.253 kb on - strand, within merR at 834.291 kb on + strand, within merR at 834.315 kb on + strand, within merR at 834.318 kb on - strand, within merR at 834.351 kb on + strand, within merR at 834.375 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.455 kb on + strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.476 kb on + strand, within merR at 834.481 kb on + strand, within merR at 834.482 kb on + strand, within merR at 834.488 kb on + strand, within merR at 834.489 kb on - strand, within merR at 834.490 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.513 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand at 834.527 kb on + strand, within merR at 834.537 kb on - strand, within merR at 834.546 kb on - strand, within merR at 834.547 kb on - strand, within merR at 834.616 kb on - strand, within merR at 834.651 kb on + strand, within merR at 834.651 kb on - strand, within merR at 834.659 kb on - strand, within merR at 834.711 kb on + strand, within merR at 834.746 kb on + strand, within merR at 834.754 kb on - strand, within merR at 834.800 kb on + strand, within merR at 834.904 kb on + strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.927 kb on - strand at 834.962 kb on + strand at 835.139 kb on + strand, within Synpcc7942_0840 at 835.233 kb on - strand at 835.259 kb on + strand, within Synpcc7942_0840 at 835.259 kb on + strand, within Synpcc7942_0840 at 835.262 kb on - strand, within Synpcc7942_0840 at 835.341 kb on + strand, within Synpcc7942_0840 at 835.472 kb on - strand at 835.673 kb on + strand at 835.705 kb on + strand at 835.705 kb on + strand at 835.706 kb on + strand at 835.713 kb on - strand at 835.713 kb on - strand at 835.714 kb on - strand at 835.714 kb on - strand at 835.732 kb on + strand at 835.740 kb on - strand at 835.770 kb on + strand at 835.778 kb on - strand at 835.792 kb on - strand at 835.813 kb on + strand, within Synpcc7942_0841 at 835.823 kb on - strand, within Synpcc7942_0841 at 835.827 kb on + strand, within Synpcc7942_0841 at 835.828 kb on - strand, within Synpcc7942_0841 at 835.835 kb on - strand, within Synpcc7942_0841 at 835.860 kb on + strand, within Synpcc7942_0841 at 835.933 kb on - strand, within Synpcc7942_0841
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 832,952 - +0.2 832,953 + -0.5 832,961 - -0.6 832,961 - -0.4 832,984 - Synpcc7942_0838 0.11 -0.3 833,051 + Synpcc7942_0838 0.17 +1.0 833,097 - Synpcc7942_0838 0.22 -2.5 833,114 - Synpcc7942_0838 0.23 +0.1 833,160 - Synpcc7942_0838 0.27 +0.1 833,166 - Synpcc7942_0838 0.28 -0.1 833,166 - Synpcc7942_0838 0.28 -0.1 833,166 - Synpcc7942_0838 0.28 -1.4 833,168 + Synpcc7942_0838 0.28 +0.6 833,168 + Synpcc7942_0838 0.28 -1.0 833,168 + Synpcc7942_0838 0.28 -1.9 833,168 + Synpcc7942_0838 0.28 -0.7 833,168 + Synpcc7942_0838 0.28 -1.5 833,168 + Synpcc7942_0838 0.28 -0.1 833,176 - Synpcc7942_0838 0.29 +0.1 833,176 - Synpcc7942_0838 0.29 -1.3 833,176 - Synpcc7942_0838 0.29 +0.1 833,179 + Synpcc7942_0838 0.29 -0.2 833,184 - Synpcc7942_0838 0.30 +0.7 833,197 - Synpcc7942_0838 0.31 +0.1 833,242 - Synpcc7942_0838 0.35 +0.5 833,269 + Synpcc7942_0838 0.37 -0.1 833,279 - Synpcc7942_0838 0.38 +0.3 833,284 - Synpcc7942_0838 0.39 +1.4 833,292 - Synpcc7942_0838 0.39 -0.3 833,299 + Synpcc7942_0838 0.40 +0.7 833,304 + Synpcc7942_0838 0.40 +0.6 833,307 - Synpcc7942_0838 0.41 -0.1 833,307 - Synpcc7942_0838 0.41 -0.5 833,308 + Synpcc7942_0838 0.41 -0.9 833,320 + Synpcc7942_0838 0.42 -1.5 833,326 + Synpcc7942_0838 0.42 -1.0 833,328 - Synpcc7942_0838 0.43 +1.9 833,328 - Synpcc7942_0838 0.43 -0.7 833,338 - Synpcc7942_0838 0.44 -1.2 833,346 + Synpcc7942_0838 0.44 +1.5 833,359 - Synpcc7942_0838 0.45 -2.1 833,364 - Synpcc7942_0838 0.46 -1.2 833,382 + Synpcc7942_0838 0.48 -0.6 833,407 + Synpcc7942_0838 0.50 -1.0 833,417 + Synpcc7942_0838 0.51 +0.4 833,425 + Synpcc7942_0838 0.51 -0.6 833,433 - Synpcc7942_0838 0.52 -0.1 833,446 - Synpcc7942_0838 0.53 -0.7 833,474 + Synpcc7942_0838 0.56 +1.2 833,486 + Synpcc7942_0838 0.57 -0.8 833,492 - Synpcc7942_0838 0.58 +1.0 833,494 - Synpcc7942_0838 0.58 -1.3 833,494 - Synpcc7942_0838 0.58 +1.2 833,494 - Synpcc7942_0838 0.58 -0.7 833,509 + Synpcc7942_0838 0.59 +0.0 833,537 - Synpcc7942_0838 0.62 +0.7 833,544 + Synpcc7942_0838 0.62 +0.5 833,544 + Synpcc7942_0838 0.62 +0.7 833,544 + Synpcc7942_0838 0.62 +0.5 833,586 + Synpcc7942_0838 0.66 +0.1 833,594 + Synpcc7942_0838 0.67 +0.3 833,601 + Synpcc7942_0838 0.67 -0.5 833,613 - Synpcc7942_0838 0.69 +1.3 833,614 + Synpcc7942_0838 0.69 +0.6 833,637 - Synpcc7942_0838 0.71 -0.8 833,651 + Synpcc7942_0838 0.72 +0.5 833,659 + Synpcc7942_0838 0.73 +0.8 833,712 - Synpcc7942_0838 0.78 -0.7 833,739 - Synpcc7942_0838 0.80 +0.6 833,762 + Synpcc7942_0838 0.82 +0.2 833,809 + Synpcc7942_0838 0.86 +0.4 833,817 - Synpcc7942_0838 0.87 -1.2 833,846 + Synpcc7942_0838 0.90 +0.1 833,856 + -1.0 833,927 + +0.1 833,927 + +0.7 833,929 + +0.3 833,929 + +0.5 833,929 + +1.1 833,929 + -1.0 833,933 - +1.0 833,935 - -0.4 833,935 - -0.9 833,935 - -0.8 833,953 + -0.4 833,960 + -1.0 833,961 - +0.4 833,961 - -2.0 833,968 - +0.5 833,975 + +0.2 833,975 + +1.1 833,975 + -0.2 833,975 + +0.6 833,983 - +0.5 833,983 - +1.2 833,983 - +0.7 833,993 - -0.7 833,998 - -0.4 834,029 - -0.3 834,054 - merR Synpcc7942_0839 0.10 +0.8 834,066 + merR Synpcc7942_0839 0.12 -0.9 834,071 + merR Synpcc7942_0839 0.12 -0.5 834,074 - merR Synpcc7942_0839 0.12 -0.1 834,084 - merR Synpcc7942_0839 0.13 +0.6 834,084 - merR Synpcc7942_0839 0.13 -0.0 834,107 - merR Synpcc7942_0839 0.16 +2.3 834,132 - merR Synpcc7942_0839 0.18 +0.4 834,189 - merR Synpcc7942_0839 0.24 -1.4 834,202 - merR Synpcc7942_0839 0.25 -0.1 834,204 + merR Synpcc7942_0839 0.25 -1.3 834,204 + merR Synpcc7942_0839 0.25 -1.9 834,212 - merR Synpcc7942_0839 0.26 -2.9 834,212 - merR Synpcc7942_0839 0.26 -0.6 834,217 - merR Synpcc7942_0839 0.27 -0.9 834,222 - merR Synpcc7942_0839 0.27 -0.3 834,226 + merR Synpcc7942_0839 0.27 -0.5 834,246 - merR Synpcc7942_0839 0.29 -0.6 834,253 - merR Synpcc7942_0839 0.30 -0.3 834,291 + merR Synpcc7942_0839 0.34 -1.4 834,315 + merR Synpcc7942_0839 0.36 -0.6 834,318 - merR Synpcc7942_0839 0.37 +0.2 834,351 + merR Synpcc7942_0839 0.40 +0.9 834,375 + merR Synpcc7942_0839 0.42 -1.0 834,448 + merR Synpcc7942_0839 0.50 +1.3 834,448 + merR Synpcc7942_0839 0.50 +0.6 834,448 + merR Synpcc7942_0839 0.50 -0.7 834,448 + merR Synpcc7942_0839 0.50 +0.5 834,455 + merR Synpcc7942_0839 0.50 +0.1 834,456 - merR Synpcc7942_0839 0.50 +0.7 834,456 - merR Synpcc7942_0839 0.50 -2.4 834,456 - merR Synpcc7942_0839 0.50 -0.9 834,463 - merR Synpcc7942_0839 0.51 +0.3 834,463 - merR Synpcc7942_0839 0.51 -1.3 834,476 + merR Synpcc7942_0839 0.52 +0.1 834,481 + merR Synpcc7942_0839 0.53 -0.3 834,482 + merR Synpcc7942_0839 0.53 -0.2 834,488 + merR Synpcc7942_0839 0.54 -0.3 834,489 - merR Synpcc7942_0839 0.54 +1.5 834,490 - merR Synpcc7942_0839 0.54 -0.3 834,496 - merR Synpcc7942_0839 0.54 +0.3 834,496 - merR Synpcc7942_0839 0.54 -2.1 834,496 - merR Synpcc7942_0839 0.54 -0.6 834,496 - merR Synpcc7942_0839 0.54 -0.8 834,496 - merR Synpcc7942_0839 0.54 -0.6 834,496 - merR Synpcc7942_0839 0.54 -0.0 834,513 + merR Synpcc7942_0839 0.56 +0.7 834,514 + merR Synpcc7942_0839 0.56 +0.6 834,514 + merR Synpcc7942_0839 0.56 +0.4 834,514 + merR Synpcc7942_0839 0.56 -1.0 834,514 + merR Synpcc7942_0839 0.56 -0.4 834,522 - merR Synpcc7942_0839 0.57 -0.5 834,522 - merR Synpcc7942_0839 0.57 -0.6 834,522 - merR Synpcc7942_0839 0.57 -1.7 834,522 - merR Synpcc7942_0839 0.57 -0.1 834,522 - +2.3 834,527 + merR Synpcc7942_0839 0.57 -0.5 834,537 - merR Synpcc7942_0839 0.58 -1.1 834,546 - merR Synpcc7942_0839 0.59 +0.1 834,547 - merR Synpcc7942_0839 0.59 -0.7 834,616 - merR Synpcc7942_0839 0.66 +0.9 834,651 + merR Synpcc7942_0839 0.70 -0.0 834,651 - merR Synpcc7942_0839 0.70 -0.4 834,659 - merR Synpcc7942_0839 0.71 -1.1 834,711 + merR Synpcc7942_0839 0.76 -0.4 834,746 + merR Synpcc7942_0839 0.79 -0.7 834,754 - merR Synpcc7942_0839 0.80 +0.2 834,800 + merR Synpcc7942_0839 0.85 -1.0 834,904 + +0.2 834,912 - +0.8 834,912 - +2.3 834,927 - -1.1 834,962 + +0.8 835,139 + Synpcc7942_0840 0.31 -0.3 835,233 - +1.1 835,259 + Synpcc7942_0840 0.55 -0.1 835,259 + Synpcc7942_0840 0.55 -0.2 835,262 - Synpcc7942_0840 0.56 -1.5 835,341 + Synpcc7942_0840 0.72 -0.8 835,472 - -0.2 835,673 + +0.8 835,705 + -0.4 835,705 + -0.4 835,706 + -0.7 835,713 - -1.3 835,713 - -1.0 835,714 - +0.1 835,714 - -0.2 835,732 + -0.6 835,740 - -0.2 835,770 + +0.6 835,778 - +0.9 835,792 - -2.0 835,813 + Synpcc7942_0841 0.11 -1.4 835,823 - Synpcc7942_0841 0.11 -0.9 835,827 + Synpcc7942_0841 0.12 +0.0 835,828 - Synpcc7942_0841 0.12 +0.1 835,835 - Synpcc7942_0841 0.12 -0.3 835,860 + Synpcc7942_0841 0.14 +0.7 835,933 - Synpcc7942_0841 0.20 -1.0
Or see this region's nucleotide sequence