Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0809 and Synpcc7942_0810 are separated by 37 nucleotides Synpcc7942_0810 and nha1 are separated by 99 nucleotides
Synpcc7942_0809: Synpcc7942_0809 - hypothetical protein, at 803,073 to 804,815
_0809
Synpcc7942_0810: Synpcc7942_0810 - hypothetical protein, at 804,853 to 805,086
_0810
Synpcc7942_0811: nha1 - Na+/H+ antiporter, at 805,186 to 806,769
nha1
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.858 kb on - strand, within Synpcc7942_0809 at 803.863 kb on - strand, within Synpcc7942_0809 at 803.880 kb on - strand, within Synpcc7942_0809 at 804.001 kb on + strand, within Synpcc7942_0809 at 804.018 kb on + strand, within Synpcc7942_0809 at 804.053 kb on + strand, within Synpcc7942_0809 at 804.072 kb on + strand, within Synpcc7942_0809 at 804.126 kb on + strand, within Synpcc7942_0809 at 804.127 kb on + strand, within Synpcc7942_0809 at 804.127 kb on + strand, within Synpcc7942_0809 at 804.135 kb on - strand, within Synpcc7942_0809 at 804.135 kb on - strand, within Synpcc7942_0809 at 804.194 kb on + strand, within Synpcc7942_0809 at 804.202 kb on - strand, within Synpcc7942_0809 at 804.221 kb on + strand, within Synpcc7942_0809 at 804.238 kb on + strand, within Synpcc7942_0809 at 804.255 kb on + strand, within Synpcc7942_0809 at 804.256 kb on - strand, within Synpcc7942_0809 at 804.291 kb on + strand, within Synpcc7942_0809 at 804.291 kb on + strand, within Synpcc7942_0809 at 804.299 kb on - strand, within Synpcc7942_0809 at 804.299 kb on - strand, within Synpcc7942_0809 at 804.309 kb on - strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.313 kb on + strand, within Synpcc7942_0809 at 804.321 kb on - strand, within Synpcc7942_0809 at 804.321 kb on - strand, within Synpcc7942_0809 at 804.326 kb on - strand, within Synpcc7942_0809 at 804.354 kb on - strand, within Synpcc7942_0809 at 804.354 kb on - strand, within Synpcc7942_0809 at 804.358 kb on + strand, within Synpcc7942_0809 at 804.381 kb on - strand, within Synpcc7942_0809 at 804.383 kb on + strand, within Synpcc7942_0809 at 804.391 kb on - strand, within Synpcc7942_0809 at 804.391 kb on - strand, within Synpcc7942_0809 at 804.412 kb on - strand, within Synpcc7942_0809 at 804.423 kb on - strand, within Synpcc7942_0809 at 804.446 kb on + strand, within Synpcc7942_0809 at 804.471 kb on - strand, within Synpcc7942_0809 at 804.491 kb on - strand, within Synpcc7942_0809 at 804.498 kb on + strand, within Synpcc7942_0809 at 804.506 kb on - strand, within Synpcc7942_0809 at 804.506 kb on - strand, within Synpcc7942_0809 at 804.507 kb on + strand, within Synpcc7942_0809 at 804.559 kb on - strand, within Synpcc7942_0809 at 804.570 kb on - strand, within Synpcc7942_0809 at 804.572 kb on - strand, within Synpcc7942_0809 at 804.574 kb on + strand, within Synpcc7942_0809 at 804.574 kb on + strand, within Synpcc7942_0809 at 804.582 kb on - strand, within Synpcc7942_0809 at 804.585 kb on + strand, within Synpcc7942_0809 at 804.595 kb on + strand, within Synpcc7942_0809 at 804.595 kb on - strand, within Synpcc7942_0809 at 804.614 kb on - strand, within Synpcc7942_0809 at 804.668 kb on - strand at 804.669 kb on - strand at 804.674 kb on - strand at 804.674 kb on - strand at 804.674 kb on - strand at 804.699 kb on - strand at 804.709 kb on - strand at 804.711 kb on + strand at 804.716 kb on + strand at 804.724 kb on - strand at 804.736 kb on - strand at 804.743 kb on + strand at 804.788 kb on + strand at 804.794 kb on - strand at 804.796 kb on - strand at 804.809 kb on + strand at 804.809 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.810 kb on + strand at 804.811 kb on + strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.818 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.819 kb on - strand at 804.825 kb on + strand at 804.917 kb on + strand, within Synpcc7942_0810 at 804.918 kb on - strand, within Synpcc7942_0810 at 804.943 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.987 kb on + strand, within Synpcc7942_0810 at 804.990 kb on + strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 804.995 kb on - strand, within Synpcc7942_0810 at 805.011 kb on + strand, within Synpcc7942_0810 at 805.012 kb on + strand, within Synpcc7942_0810 at 805.012 kb on + strand, within Synpcc7942_0810 at 805.031 kb on + strand, within Synpcc7942_0810 at 805.039 kb on - strand, within Synpcc7942_0810 at 805.077 kb on + strand at 805.171 kb on + strand at 805.177 kb on - strand at 805.183 kb on + strand at 805.183 kb on + strand at 805.190 kb on + strand at 805.190 kb on + strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.191 kb on - strand at 805.198 kb on - strand at 805.214 kb on - strand at 805.216 kb on + strand at 805.257 kb on - strand at 805.262 kb on + strand at 805.319 kb on + strand at 805.340 kb on + strand at 805.598 kb on + strand, within nha1 at 805.618 kb on + strand, within nha1 at 805.639 kb on - strand, within nha1 at 805.639 kb on - strand, within nha1 at 805.664 kb on - strand, within nha1 at 805.666 kb on - strand, within nha1 at 805.699 kb on + strand, within nha1 at 805.754 kb on - strand, within nha1 at 805.794 kb on + strand, within nha1 at 805.820 kb on + strand, within nha1 at 805.828 kb on - strand, within nha1 at 805.847 kb on + strand, within nha1 at 805.848 kb on + strand, within nha1 at 805.853 kb on + strand, within nha1 at 805.853 kb on + strand, within nha1 at 805.875 kb on - strand, within nha1 at 805.891 kb on + strand, within nha1 at 805.898 kb on + strand, within nha1 at 805.901 kb on + strand, within nha1 at 805.936 kb on - strand, within nha1 at 806.006 kb on + strand, within nha1 at 806.015 kb on + strand, within nha1 at 806.025 kb on + strand, within nha1 at 806.078 kb on + strand, within nha1 at 806.086 kb on - strand, within nha1
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 803,858 - Synpcc7942_0809 0.45 -1.8 803,858 - Synpcc7942_0809 0.45 -1.1 803,863 - Synpcc7942_0809 0.45 -3.1 803,880 - Synpcc7942_0809 0.46 -2.3 804,001 + Synpcc7942_0809 0.53 -2.5 804,018 + Synpcc7942_0809 0.54 -0.7 804,053 + Synpcc7942_0809 0.56 -0.8 804,072 + Synpcc7942_0809 0.57 -1.9 804,126 + Synpcc7942_0809 0.60 -2.4 804,127 + Synpcc7942_0809 0.60 -2.4 804,127 + Synpcc7942_0809 0.60 -2.4 804,135 - Synpcc7942_0809 0.61 -2.3 804,135 - Synpcc7942_0809 0.61 -2.3 804,194 + Synpcc7942_0809 0.64 -3.2 804,202 - Synpcc7942_0809 0.65 -2.7 804,221 + Synpcc7942_0809 0.66 -3.3 804,238 + Synpcc7942_0809 0.67 -0.3 804,255 + Synpcc7942_0809 0.68 -1.7 804,256 - Synpcc7942_0809 0.68 -1.6 804,291 + Synpcc7942_0809 0.70 -1.6 804,291 + Synpcc7942_0809 0.70 -3.0 804,299 - Synpcc7942_0809 0.70 -1.5 804,299 - Synpcc7942_0809 0.70 -1.4 804,309 - Synpcc7942_0809 0.71 -2.2 804,313 + Synpcc7942_0809 0.71 -3.1 804,313 + Synpcc7942_0809 0.71 -4.0 804,313 + Synpcc7942_0809 0.71 -2.8 804,313 + Synpcc7942_0809 0.71 -4.1 804,321 - Synpcc7942_0809 0.72 -0.4 804,321 - Synpcc7942_0809 0.72 -3.0 804,326 - Synpcc7942_0809 0.72 -1.3 804,354 - Synpcc7942_0809 0.73 -3.1 804,354 - Synpcc7942_0809 0.73 -3.0 804,358 + Synpcc7942_0809 0.74 -3.0 804,381 - Synpcc7942_0809 0.75 -1.6 804,383 + Synpcc7942_0809 0.75 -1.7 804,391 - Synpcc7942_0809 0.76 -1.8 804,391 - Synpcc7942_0809 0.76 -0.8 804,412 - Synpcc7942_0809 0.77 -1.9 804,423 - Synpcc7942_0809 0.77 -3.2 804,446 + Synpcc7942_0809 0.79 -2.1 804,471 - Synpcc7942_0809 0.80 -0.3 804,491 - Synpcc7942_0809 0.81 -0.2 804,498 + Synpcc7942_0809 0.82 -1.1 804,506 - Synpcc7942_0809 0.82 -1.5 804,506 - Synpcc7942_0809 0.82 -1.4 804,507 + Synpcc7942_0809 0.82 -2.7 804,559 - Synpcc7942_0809 0.85 -2.0 804,570 - Synpcc7942_0809 0.86 -1.5 804,572 - Synpcc7942_0809 0.86 -1.3 804,574 + Synpcc7942_0809 0.86 -0.7 804,574 + Synpcc7942_0809 0.86 -0.4 804,582 - Synpcc7942_0809 0.87 -2.7 804,585 + Synpcc7942_0809 0.87 -2.4 804,595 + Synpcc7942_0809 0.87 -2.1 804,595 - Synpcc7942_0809 0.87 -1.6 804,614 - Synpcc7942_0809 0.88 -1.9 804,668 - -0.3 804,669 - -3.7 804,674 - -1.4 804,674 - -4.2 804,674 - -1.5 804,699 - -3.0 804,709 - -1.2 804,711 + -0.7 804,716 + -2.3 804,724 - -2.1 804,736 - -2.9 804,743 + -0.3 804,788 + -0.3 804,794 - -0.6 804,796 - +0.5 804,809 + +0.3 804,809 + +0.3 804,810 + -1.3 804,810 + -1.0 804,810 + -1.0 804,810 + -1.7 804,810 + -1.5 804,810 + +0.2 804,810 + -1.9 804,810 + -0.4 804,811 + -0.2 804,818 - -0.1 804,818 - -0.1 804,818 - +0.5 804,818 - -1.4 804,818 - +1.0 804,819 - +0.0 804,819 - +0.6 804,819 - +0.7 804,819 - +1.1 804,825 + -0.8 804,917 + Synpcc7942_0810 0.27 +1.7 804,918 - Synpcc7942_0810 0.28 -0.7 804,943 + Synpcc7942_0810 0.38 -0.2 804,987 + Synpcc7942_0810 0.57 -0.3 804,987 + Synpcc7942_0810 0.57 -0.6 804,987 + Synpcc7942_0810 0.57 -0.9 804,987 + Synpcc7942_0810 0.57 -2.2 804,990 + Synpcc7942_0810 0.59 +0.6 804,995 - Synpcc7942_0810 0.61 -0.3 804,995 - Synpcc7942_0810 0.61 -1.0 804,995 - Synpcc7942_0810 0.61 -0.4 804,995 - Synpcc7942_0810 0.61 -0.4 804,995 - Synpcc7942_0810 0.61 -0.9 804,995 - Synpcc7942_0810 0.61 -0.1 805,011 + Synpcc7942_0810 0.68 -1.3 805,012 + Synpcc7942_0810 0.68 -0.5 805,012 + Synpcc7942_0810 0.68 -0.8 805,031 + Synpcc7942_0810 0.76 -0.4 805,039 - Synpcc7942_0810 0.79 +0.6 805,077 + +0.7 805,171 + -1.4 805,177 - -1.2 805,183 + -1.7 805,183 + -0.3 805,190 + -1.0 805,190 + -1.5 805,191 - +0.4 805,191 - +0.7 805,191 - -0.7 805,191 - +0.8 805,198 - -2.3 805,214 - -0.8 805,216 + +0.2 805,257 - +0.8 805,262 + -0.5 805,319 + +0.4 805,340 + +0.4 805,598 + nha1 Synpcc7942_0811 0.26 -0.8 805,618 + nha1 Synpcc7942_0811 0.27 -0.6 805,639 - nha1 Synpcc7942_0811 0.29 -0.8 805,639 - nha1 Synpcc7942_0811 0.29 -0.3 805,664 - nha1 Synpcc7942_0811 0.30 +0.3 805,666 - nha1 Synpcc7942_0811 0.30 -0.6 805,699 + nha1 Synpcc7942_0811 0.32 -1.5 805,754 - nha1 Synpcc7942_0811 0.36 -1.3 805,794 + nha1 Synpcc7942_0811 0.38 +0.2 805,820 + nha1 Synpcc7942_0811 0.40 -0.7 805,828 - nha1 Synpcc7942_0811 0.41 -0.6 805,847 + nha1 Synpcc7942_0811 0.42 -0.1 805,848 + nha1 Synpcc7942_0811 0.42 -2.5 805,853 + nha1 Synpcc7942_0811 0.42 -0.6 805,853 + nha1 Synpcc7942_0811 0.42 -1.8 805,875 - nha1 Synpcc7942_0811 0.43 -2.0 805,891 + nha1 Synpcc7942_0811 0.45 +1.3 805,898 + nha1 Synpcc7942_0811 0.45 +0.2 805,901 + nha1 Synpcc7942_0811 0.45 +0.9 805,936 - nha1 Synpcc7942_0811 0.47 -2.1 806,006 + nha1 Synpcc7942_0811 0.52 +0.2 806,015 + nha1 Synpcc7942_0811 0.52 -3.5 806,025 + nha1 Synpcc7942_0811 0.53 -1.5 806,078 + nha1 Synpcc7942_0811 0.56 -0.7 806,086 - nha1 Synpcc7942_0811 0.57 -0.2
Or see this region's nucleotide sequence