Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cad and Synpcc7942_0708 are separated by 66 nucleotides Synpcc7942_0708 and Synpcc7942_0709 are separated by 51 nucleotides Synpcc7942_0709 and Synpcc7942_0710 are separated by 2 nucleotides
Synpcc7942_0707: cad - arginine decarboxylase, at 697,172 to 698,641
cad
Synpcc7942_0708: Synpcc7942_0708 - hypothetical protein, at 698,708 to 700,459
_0708
Synpcc7942_0709: Synpcc7942_0709 - hypothetical protein, at 700,511 to 700,840
_0709
Synpcc7942_0710: Synpcc7942_0710 - hypothetical protein, at 700,843 to 701,538
_0710
Position (kb) 698
699
700
701 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 697.720 kb on + strand, within cad at 697.744 kb on - strand, within cad at 697.828 kb on + strand, within cad at 697.878 kb on - strand, within cad at 697.909 kb on + strand, within cad at 697.914 kb on + strand, within cad at 697.922 kb on - strand, within cad at 697.945 kb on - strand, within cad at 698.042 kb on + strand, within cad at 698.124 kb on + strand, within cad at 698.251 kb on - strand, within cad at 698.412 kb on + strand, within cad at 698.438 kb on - strand, within cad at 698.442 kb on + strand, within cad at 698.530 kb on - strand at 698.531 kb on - strand at 698.599 kb on + strand at 698.645 kb on + strand at 698.645 kb on + strand at 698.715 kb on + strand at 698.722 kb on + strand at 698.762 kb on + strand at 698.762 kb on + strand at 698.786 kb on - strand at 698.838 kb on + strand at 698.876 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand, within Synpcc7942_0708 at 698.889 kb on + strand, within Synpcc7942_0708 at 698.911 kb on - strand, within Synpcc7942_0708 at 698.919 kb on - strand, within Synpcc7942_0708 at 698.920 kb on + strand, within Synpcc7942_0708 at 698.925 kb on + strand, within Synpcc7942_0708 at 698.955 kb on + strand, within Synpcc7942_0708 at 698.956 kb on + strand, within Synpcc7942_0708 at 698.969 kb on - strand, within Synpcc7942_0708 at 698.989 kb on - strand, within Synpcc7942_0708 at 699.008 kb on - strand, within Synpcc7942_0708 at 699.127 kb on - strand, within Synpcc7942_0708 at 699.149 kb on - strand, within Synpcc7942_0708 at 699.172 kb on - strand, within Synpcc7942_0708 at 699.183 kb on - strand, within Synpcc7942_0708 at 699.229 kb on - strand, within Synpcc7942_0708 at 699.236 kb on - strand, within Synpcc7942_0708 at 699.514 kb on - strand, within Synpcc7942_0708 at 699.635 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.689 kb on + strand, within Synpcc7942_0708 at 699.690 kb on - strand, within Synpcc7942_0708 at 699.696 kb on - strand, within Synpcc7942_0708 at 699.799 kb on + strand, within Synpcc7942_0708 at 699.799 kb on - strand, within Synpcc7942_0708 at 699.809 kb on - strand, within Synpcc7942_0708 at 699.828 kb on + strand, within Synpcc7942_0708 at 699.855 kb on + strand, within Synpcc7942_0708 at 699.862 kb on - strand, within Synpcc7942_0708 at 699.863 kb on - strand, within Synpcc7942_0708 at 699.863 kb on - strand, within Synpcc7942_0708 at 699.866 kb on + strand at 699.879 kb on - strand, within Synpcc7942_0708 at 699.915 kb on + strand, within Synpcc7942_0708 at 699.935 kb on + strand, within Synpcc7942_0708 at 699.984 kb on + strand, within Synpcc7942_0708 at 700.018 kb on - strand, within Synpcc7942_0708 at 700.082 kb on + strand, within Synpcc7942_0708 at 700.090 kb on - strand, within Synpcc7942_0708 at 700.132 kb on - strand, within Synpcc7942_0708 at 700.225 kb on - strand, within Synpcc7942_0708 at 700.262 kb on - strand, within Synpcc7942_0708 at 700.267 kb on + strand, within Synpcc7942_0708 at 700.288 kb on + strand at 700.296 kb on - strand at 700.316 kb on + strand at 700.324 kb on - strand at 700.324 kb on - strand at 700.338 kb on - strand at 700.357 kb on - strand at 700.389 kb on + strand at 700.482 kb on + strand at 700.484 kb on + strand at 700.490 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.519 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.534 kb on - strand at 700.573 kb on + strand, within Synpcc7942_0709 at 700.607 kb on + strand, within Synpcc7942_0709 at 700.621 kb on + strand, within Synpcc7942_0709 at 700.622 kb on + strand, within Synpcc7942_0709 at 700.631 kb on + strand, within Synpcc7942_0709 at 700.641 kb on - strand, within Synpcc7942_0709 at 700.648 kb on + strand, within Synpcc7942_0709 at 700.746 kb on - strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.816 kb on + strand at 700.840 kb on + strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 697,720 + cad Synpcc7942_0707 0.37 -0.3 697,744 - cad Synpcc7942_0707 0.39 -1.0 697,828 + cad Synpcc7942_0707 0.45 -3.0 697,878 - cad Synpcc7942_0707 0.48 -2.6 697,909 + cad Synpcc7942_0707 0.50 -1.7 697,914 + cad Synpcc7942_0707 0.50 +0.2 697,922 - cad Synpcc7942_0707 0.51 -0.6 697,945 - cad Synpcc7942_0707 0.53 -0.5 698,042 + cad Synpcc7942_0707 0.59 +0.7 698,124 + cad Synpcc7942_0707 0.65 -0.0 698,251 - cad Synpcc7942_0707 0.73 -0.4 698,412 + cad Synpcc7942_0707 0.84 -0.6 698,438 - cad Synpcc7942_0707 0.86 +0.5 698,442 + cad Synpcc7942_0707 0.86 +0.0 698,530 - -1.4 698,531 - -1.0 698,599 + -0.7 698,645 + -0.1 698,645 + +0.8 698,715 + -1.7 698,722 + -1.4 698,762 + -2.7 698,762 + -3.1 698,786 - -1.9 698,838 + -1.7 698,876 + +1.2 698,878 + -1.7 698,878 + -0.2 698,878 + -3.0 698,878 + -3.0 698,878 + -2.2 698,878 + -2.0 698,886 - Synpcc7942_0708 0.10 -3.5 698,886 - -0.5 698,886 - Synpcc7942_0708 0.10 -2.6 698,886 - Synpcc7942_0708 0.10 -2.8 698,889 + Synpcc7942_0708 0.10 -2.9 698,911 - Synpcc7942_0708 0.12 -2.4 698,919 - Synpcc7942_0708 0.12 -0.7 698,920 + Synpcc7942_0708 0.12 -3.2 698,925 + Synpcc7942_0708 0.12 -0.6 698,955 + Synpcc7942_0708 0.14 -0.5 698,956 + Synpcc7942_0708 0.14 -3.8 698,969 - Synpcc7942_0708 0.15 -2.0 698,989 - Synpcc7942_0708 0.16 -2.3 699,008 - Synpcc7942_0708 0.17 -0.6 699,127 - Synpcc7942_0708 0.24 -2.6 699,149 - Synpcc7942_0708 0.25 -2.4 699,172 - Synpcc7942_0708 0.26 +0.0 699,183 - Synpcc7942_0708 0.27 -0.6 699,229 - Synpcc7942_0708 0.30 -2.9 699,236 - Synpcc7942_0708 0.30 -3.4 699,514 - Synpcc7942_0708 0.46 -2.0 699,635 + Synpcc7942_0708 0.53 -3.7 699,674 + Synpcc7942_0708 0.55 -1.7 699,674 + Synpcc7942_0708 0.55 -0.5 699,674 + Synpcc7942_0708 0.55 -1.9 699,689 + Synpcc7942_0708 0.56 -1.8 699,690 - Synpcc7942_0708 0.56 -1.6 699,696 - Synpcc7942_0708 0.56 -2.0 699,799 + Synpcc7942_0708 0.62 -4.4 699,799 - Synpcc7942_0708 0.62 +0.2 699,809 - Synpcc7942_0708 0.63 -3.4 699,828 + Synpcc7942_0708 0.64 -1.2 699,855 + Synpcc7942_0708 0.65 -2.6 699,862 - Synpcc7942_0708 0.66 -3.8 699,863 - Synpcc7942_0708 0.66 -2.7 699,863 - Synpcc7942_0708 0.66 -3.0 699,866 + +1.0 699,879 - Synpcc7942_0708 0.67 -0.5 699,915 + Synpcc7942_0708 0.69 -4.2 699,935 + Synpcc7942_0708 0.70 -1.1 699,984 + Synpcc7942_0708 0.73 -1.7 700,018 - Synpcc7942_0708 0.75 -2.7 700,082 + Synpcc7942_0708 0.78 -1.7 700,090 - Synpcc7942_0708 0.79 -1.9 700,132 - Synpcc7942_0708 0.81 -3.8 700,225 - Synpcc7942_0708 0.87 -1.1 700,262 - Synpcc7942_0708 0.89 -2.3 700,267 + Synpcc7942_0708 0.89 -3.9 700,288 + -1.1 700,296 - -2.6 700,316 + -4.2 700,324 - -1.1 700,324 - -3.6 700,338 - -1.4 700,357 - -1.4 700,389 + +1.2 700,482 + +0.1 700,484 + -1.8 700,490 - +0.0 700,492 - -0.8 700,492 - +1.3 700,492 - +0.6 700,492 - -1.0 700,519 + -0.3 700,526 + +0.0 700,526 + +0.1 700,526 + +0.0 700,526 + -0.0 700,534 - +1.3 700,573 + Synpcc7942_0709 0.19 +0.8 700,607 + Synpcc7942_0709 0.29 +0.3 700,621 + Synpcc7942_0709 0.33 -0.3 700,622 + Synpcc7942_0709 0.34 -1.6 700,631 + Synpcc7942_0709 0.36 +1.1 700,641 - Synpcc7942_0709 0.39 -0.5 700,648 + Synpcc7942_0709 0.42 -1.2 700,746 - Synpcc7942_0709 0.71 +0.4 700,774 + Synpcc7942_0709 0.80 +1.3 700,774 + Synpcc7942_0709 0.80 +0.5 700,774 + Synpcc7942_0709 0.80 -0.6 700,782 - Synpcc7942_0709 0.82 +0.9 700,782 - Synpcc7942_0709 0.82 -0.5 700,782 - Synpcc7942_0709 0.82 -2.0 700,816 + +0.4 700,840 + +0.8 700,848 - +0.5 700,848 - +1.3 700,848 - -0.0 700,848 - +0.2 700,848 - -0.6
Or see this region's nucleotide sequence