Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0695 and psbT are separated by 209 nucleotides psbT and psbB are separated by 76 nucleotides psbB and Synpcc7942_0698 are separated by 336 nucleotides Synpcc7942_0698 and psbM are separated by 99 nucleotides
Synpcc7942_0695: Synpcc7942_0695 - hypothetical protein, at 688,334 to 688,840
_0695
Synpcc7942_0696: psbT - photosystem II reaction center protein T, at 689,050 to 689,145
psbT
Synpcc7942_0697: psbB - photosystem II core light harvesting protein, at 689,222 to 690,748
psbB
Synpcc7942_0698: Synpcc7942_0698 - probable ferredoxin, at 691,085 to 691,519
_0698
Synpcc7942_0699: psbM - photosystem II reaction center protein PsbM, at 691,619 to 691,726
psbM
Position (kb) 689
690
691 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 688.236 kb on + strand at 688.365 kb on + strand at 688.386 kb on + strand, within Synpcc7942_0695 at 688.434 kb on + strand, within Synpcc7942_0695 at 688.442 kb on - strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand at 688.552 kb on + strand, within Synpcc7942_0695 at 688.558 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.571 kb on - strand, within Synpcc7942_0695 at 688.622 kb on + strand, within Synpcc7942_0695 at 688.627 kb on + strand, within Synpcc7942_0695 at 688.692 kb on - strand, within Synpcc7942_0695 at 688.722 kb on + strand, within Synpcc7942_0695 at 688.759 kb on - strand, within Synpcc7942_0695 at 688.760 kb on + strand, within Synpcc7942_0695 at 688.787 kb on - strand, within Synpcc7942_0695 at 688.788 kb on - strand, within Synpcc7942_0695 at 688.825 kb on + strand at 688.871 kb on + strand at 689.018 kb on - strand at 689.021 kb on + strand at 689.021 kb on + strand at 689.028 kb on + strand at 689.029 kb on - strand at 689.095 kb on + strand, within psbT at 690.832 kb on - strand at 690.849 kb on - strand at 690.855 kb on + strand at 690.885 kb on + strand at 690.910 kb on - strand at 690.914 kb on - strand at 690.919 kb on - strand at 690.929 kb on - strand at 690.955 kb on - strand at 690.994 kb on + strand at 691.000 kb on - strand at 691.000 kb on - strand at 691.005 kb on - strand at 691.014 kb on - strand at 691.014 kb on - strand at 691.073 kb on - strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.126 kb on - strand at 691.128 kb on - strand at 691.128 kb on - strand at 691.137 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.165 kb on + strand at 691.168 kb on - strand, within Synpcc7942_0698 at 691.168 kb on - strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.185 kb on - strand, within Synpcc7942_0698 at 691.185 kb on - strand at 691.186 kb on - strand, within Synpcc7942_0698 at 691.217 kb on - strand at 691.239 kb on - strand, within Synpcc7942_0698 at 691.258 kb on - strand, within Synpcc7942_0698 at 691.291 kb on - strand, within Synpcc7942_0698 at 691.292 kb on - strand at 691.294 kb on + strand, within Synpcc7942_0698 at 691.302 kb on - strand, within Synpcc7942_0698 at 691.306 kb on + strand, within Synpcc7942_0698 at 691.312 kb on + strand, within Synpcc7942_0698 at 691.320 kb on - strand, within Synpcc7942_0698 at 691.333 kb on - strand, within Synpcc7942_0698 at 691.348 kb on + strand, within Synpcc7942_0698 at 691.369 kb on + strand, within Synpcc7942_0698 at 691.381 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.475 kb on + strand, within Synpcc7942_0698 at 691.485 kb on + strand at 691.506 kb on - strand at 691.516 kb on - strand at 691.522 kb on - strand at 691.549 kb on + strand at 691.557 kb on - strand at 691.566 kb on + strand at 691.567 kb on - strand at 691.603 kb on - strand at 691.611 kb on + strand at 691.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 688,236 + +0.1 688,365 + -2.3 688,386 + Synpcc7942_0695 0.10 -0.8 688,434 + Synpcc7942_0695 0.20 -1.2 688,442 - Synpcc7942_0695 0.21 -1.7 688,552 + Synpcc7942_0695 0.43 -1.9 688,552 + Synpcc7942_0695 0.43 -1.7 688,552 + Synpcc7942_0695 0.43 -2.2 688,552 + Synpcc7942_0695 0.43 -1.5 688,552 + Synpcc7942_0695 0.43 -0.6 688,552 + Synpcc7942_0695 0.43 -2.7 688,552 + Synpcc7942_0695 0.43 -2.0 688,552 + Synpcc7942_0695 0.43 -2.9 688,552 + Synpcc7942_0695 0.43 +0.5 688,552 + Synpcc7942_0695 0.43 -1.8 688,552 + +0.8 688,552 + Synpcc7942_0695 0.43 -4.6 688,558 - Synpcc7942_0695 0.44 +0.4 688,560 - Synpcc7942_0695 0.45 -2.7 688,560 - Synpcc7942_0695 0.45 -1.4 688,560 - Synpcc7942_0695 0.45 -3.5 688,560 - Synpcc7942_0695 0.45 -0.8 688,560 - Synpcc7942_0695 0.45 -3.3 688,560 - Synpcc7942_0695 0.45 -2.3 688,560 - Synpcc7942_0695 0.45 -1.7 688,560 - Synpcc7942_0695 0.45 -1.8 688,560 - Synpcc7942_0695 0.45 -2.2 688,571 - Synpcc7942_0695 0.47 -2.1 688,622 + Synpcc7942_0695 0.57 -1.1 688,627 + Synpcc7942_0695 0.58 -2.5 688,692 - Synpcc7942_0695 0.71 -2.2 688,722 + Synpcc7942_0695 0.77 -1.5 688,759 - Synpcc7942_0695 0.84 -1.9 688,760 + Synpcc7942_0695 0.84 -2.0 688,787 - Synpcc7942_0695 0.89 -1.0 688,788 - Synpcc7942_0695 0.90 -2.3 688,825 + -1.2 688,871 + -1.1 689,018 - -0.7 689,021 + +1.5 689,021 + +0.4 689,028 + -1.1 689,029 - +0.7 689,095 + psbT Synpcc7942_0696 0.47 -0.2 690,832 - +0.0 690,849 - +2.0 690,855 + +1.4 690,885 + +1.2 690,910 - +0.9 690,914 - +0.8 690,919 - +1.2 690,929 - -1.2 690,955 - +0.2 690,994 + +0.6 691,000 - +0.7 691,000 - +1.8 691,005 - +0.3 691,014 - +0.3 691,014 - -0.2 691,073 - +0.2 691,075 + +0.8 691,075 + -0.1 691,075 + +1.5 691,083 - +1.4 691,083 - +1.2 691,083 - -1.2 691,126 - -0.1 691,128 - +0.8 691,128 - +2.5 691,137 + Synpcc7942_0698 0.12 +0.5 691,150 + Synpcc7942_0698 0.15 +1.6 691,150 + Synpcc7942_0698 0.15 +0.2 691,165 + +0.3 691,168 - Synpcc7942_0698 0.19 +0.7 691,168 - Synpcc7942_0698 0.19 -0.0 691,177 + Synpcc7942_0698 0.21 +0.1 691,177 + Synpcc7942_0698 0.21 +1.1 691,185 - Synpcc7942_0698 0.23 +2.0 691,185 - +1.6 691,186 - Synpcc7942_0698 0.23 -1.4 691,217 - +1.3 691,239 - Synpcc7942_0698 0.35 -1.1 691,258 - Synpcc7942_0698 0.40 +0.3 691,291 - Synpcc7942_0698 0.47 +0.3 691,292 - -0.2 691,294 + Synpcc7942_0698 0.48 +2.3 691,302 - Synpcc7942_0698 0.50 -1.4 691,306 + Synpcc7942_0698 0.51 +0.7 691,312 + Synpcc7942_0698 0.52 +1.3 691,320 - Synpcc7942_0698 0.54 +1.3 691,333 - Synpcc7942_0698 0.57 -0.3 691,348 + Synpcc7942_0698 0.60 -0.9 691,369 + Synpcc7942_0698 0.65 -0.9 691,381 + Synpcc7942_0698 0.68 -1.5 691,417 + Synpcc7942_0698 0.76 +0.6 691,417 + Synpcc7942_0698 0.76 +0.1 691,417 + Synpcc7942_0698 0.76 -1.5 691,425 - Synpcc7942_0698 0.78 +0.3 691,425 - Synpcc7942_0698 0.78 -0.7 691,475 + Synpcc7942_0698 0.90 -0.2 691,485 + +0.5 691,506 - -2.1 691,516 - +0.4 691,522 - -2.4 691,549 + -0.2 691,557 - +0.4 691,566 + +0.3 691,567 - -0.1 691,603 - -0.1 691,611 + +0.5 691,733 + -0.5
Or see this region's nucleotide sequence