Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0594 and Synpcc7942_0595 overlap by 32 nucleotides Synpcc7942_0595 and Synpcc7942_0596 are separated by 97 nucleotides Synpcc7942_0596 and menB overlap by 4 nucleotides
Synpcc7942_0594: Synpcc7942_0594 - hypothetical protein, at 581,205 to 582,881
_0594
Synpcc7942_0595: Synpcc7942_0595 - hypothetical protein, at 582,850 to 583,398
_0595
Synpcc7942_0596: Synpcc7942_0596 - delta(24)-sterol C-methyltransferase, at 583,496 to 584,428
_0596
Synpcc7942_0597: menB - naphthoate synthase, at 584,425 to 585,264
menB
Position (kb) 583
584
585 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 582.511 kb on + strand, within Synpcc7942_0594 at 582.556 kb on + strand, within Synpcc7942_0594 at 582.567 kb on + strand at 582.577 kb on - strand, within Synpcc7942_0594 at 582.586 kb on - strand, within Synpcc7942_0594 at 582.632 kb on - strand, within Synpcc7942_0594 at 582.638 kb on - strand, within Synpcc7942_0594 at 582.638 kb on - strand, within Synpcc7942_0594 at 582.640 kb on + strand, within Synpcc7942_0594 at 582.640 kb on + strand, within Synpcc7942_0594 at 582.648 kb on + strand, within Synpcc7942_0594 at 582.648 kb on - strand, within Synpcc7942_0594 at 582.663 kb on - strand, within Synpcc7942_0594 at 582.668 kb on - strand, within Synpcc7942_0594 at 582.673 kb on + strand, within Synpcc7942_0594 at 582.678 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.688 kb on + strand, within Synpcc7942_0594 at 582.696 kb on - strand, within Synpcc7942_0594 at 582.696 kb on - strand, within Synpcc7942_0594 at 582.698 kb on + strand, within Synpcc7942_0594 at 582.714 kb on - strand at 582.744 kb on + strand at 582.744 kb on + strand at 582.744 kb on + strand at 582.745 kb on + strand at 582.745 kb on + strand at 582.745 kb on + strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.752 kb on - strand at 582.776 kb on + strand at 582.868 kb on - strand at 582.869 kb on + strand at 582.869 kb on + strand at 582.902 kb on - strand at 582.903 kb on - strand at 582.950 kb on - strand, within Synpcc7942_0595 at 582.963 kb on - strand, within Synpcc7942_0595 at 582.970 kb on - strand, within Synpcc7942_0595 at 582.971 kb on + strand, within Synpcc7942_0595 at 582.977 kb on + strand, within Synpcc7942_0595 at 583.022 kb on + strand, within Synpcc7942_0595 at 583.028 kb on + strand, within Synpcc7942_0595 at 583.117 kb on + strand, within Synpcc7942_0595 at 583.130 kb on - strand, within Synpcc7942_0595 at 583.139 kb on - strand, within Synpcc7942_0595 at 583.179 kb on + strand, within Synpcc7942_0595 at 583.195 kb on + strand, within Synpcc7942_0595 at 583.202 kb on + strand, within Synpcc7942_0595 at 583.203 kb on - strand, within Synpcc7942_0595 at 583.235 kb on + strand, within Synpcc7942_0595 at 583.235 kb on + strand, within Synpcc7942_0595 at 583.243 kb on - strand, within Synpcc7942_0595 at 583.243 kb on - strand, within Synpcc7942_0595 at 583.243 kb on - strand, within Synpcc7942_0595 at 583.255 kb on - strand, within Synpcc7942_0595 at 583.255 kb on - strand, within Synpcc7942_0595 at 583.257 kb on + strand, within Synpcc7942_0595 at 583.257 kb on + strand, within Synpcc7942_0595 at 583.330 kb on + strand, within Synpcc7942_0595 at 583.342 kb on + strand, within Synpcc7942_0595 at 583.355 kb on - strand at 583.423 kb on + strand at 583.429 kb on + strand at 583.436 kb on - strand at 583.436 kb on - strand at 583.460 kb on + strand at 583.469 kb on + strand at 583.548 kb on + strand at 583.556 kb on - strand at 583.558 kb on + strand at 583.590 kb on + strand, within Synpcc7942_0596 at 583.600 kb on + strand, within Synpcc7942_0596 at 583.609 kb on + strand, within Synpcc7942_0596 at 583.611 kb on + strand, within Synpcc7942_0596 at 583.677 kb on - strand, within Synpcc7942_0596 at 583.694 kb on + strand, within Synpcc7942_0596 at 583.741 kb on + strand, within Synpcc7942_0596 at 583.741 kb on + strand, within Synpcc7942_0596 at 583.749 kb on - strand, within Synpcc7942_0596 at 583.765 kb on + strand, within Synpcc7942_0596 at 583.773 kb on - strand, within Synpcc7942_0596 at 583.775 kb on + strand, within Synpcc7942_0596 at 583.781 kb on + strand, within Synpcc7942_0596 at 583.783 kb on - strand, within Synpcc7942_0596 at 583.783 kb on - strand, within Synpcc7942_0596 at 583.898 kb on + strand, within Synpcc7942_0596 at 583.908 kb on - strand, within Synpcc7942_0596 at 583.915 kb on + strand, within Synpcc7942_0596 at 583.918 kb on - strand, within Synpcc7942_0596 at 583.959 kb on + strand, within Synpcc7942_0596 at 583.967 kb on - strand, within Synpcc7942_0596 at 583.967 kb on - strand, within Synpcc7942_0596 at 583.967 kb on - strand, within Synpcc7942_0596 at 583.969 kb on + strand, within Synpcc7942_0596 at 583.970 kb on + strand, within Synpcc7942_0596 at 583.977 kb on - strand, within Synpcc7942_0596 at 583.986 kb on - strand, within Synpcc7942_0596 at 583.996 kb on - strand, within Synpcc7942_0596 at 583.996 kb on - strand, within Synpcc7942_0596 at 584.004 kb on + strand, within Synpcc7942_0596 at 584.037 kb on + strand, within Synpcc7942_0596 at 584.046 kb on - strand, within Synpcc7942_0596 at 584.046 kb on - strand, within Synpcc7942_0596 at 584.059 kb on + strand, within Synpcc7942_0596 at 584.108 kb on + strand, within Synpcc7942_0596 at 584.109 kb on + strand, within Synpcc7942_0596 at 584.136 kb on + strand, within Synpcc7942_0596 at 584.167 kb on - strand, within Synpcc7942_0596 at 584.171 kb on + strand, within Synpcc7942_0596 at 584.189 kb on - strand, within Synpcc7942_0596 at 584.191 kb on + strand, within Synpcc7942_0596 at 584.191 kb on - strand, within Synpcc7942_0596 at 584.208 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.221 kb on + strand, within Synpcc7942_0596 at 584.224 kb on + strand, within Synpcc7942_0596 at 584.249 kb on + strand, within Synpcc7942_0596 at 584.249 kb on + strand, within Synpcc7942_0596 at 584.281 kb on + strand, within Synpcc7942_0596 at 584.282 kb on + strand, within Synpcc7942_0596 at 584.290 kb on - strand, within Synpcc7942_0596 at 584.300 kb on + strand, within Synpcc7942_0596 at 584.309 kb on + strand, within Synpcc7942_0596 at 584.319 kb on + strand, within Synpcc7942_0596 at 584.327 kb on - strand, within Synpcc7942_0596 at 584.329 kb on + strand, within Synpcc7942_0596 at 584.337 kb on - strand at 584.343 kb on + strand at 584.348 kb on + strand at 584.382 kb on + strand at 584.387 kb on + strand at 584.407 kb on + strand at 584.422 kb on + strand at 584.422 kb on + strand at 584.423 kb on + strand at 585.272 kb on + strand at 585.272 kb on + strand at 585.272 kb on + strand at 585.280 kb on - strand at 585.280 kb on - strand at 585.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 582,511 + Synpcc7942_0594 0.78 -0.6 582,556 + Synpcc7942_0594 0.81 -1.3 582,567 + +0.4 582,577 - Synpcc7942_0594 0.82 +1.0 582,586 - Synpcc7942_0594 0.82 +0.8 582,632 - Synpcc7942_0594 0.85 -1.7 582,638 - Synpcc7942_0594 0.85 -0.2 582,638 - Synpcc7942_0594 0.85 -0.3 582,640 + Synpcc7942_0594 0.86 +0.1 582,640 + Synpcc7942_0594 0.86 -1.0 582,648 + Synpcc7942_0594 0.86 -2.0 582,648 - Synpcc7942_0594 0.86 -1.6 582,663 - Synpcc7942_0594 0.87 -1.2 582,668 - Synpcc7942_0594 0.87 -0.7 582,673 + Synpcc7942_0594 0.88 -1.9 582,678 + Synpcc7942_0594 0.88 -2.5 582,688 + Synpcc7942_0594 0.88 +0.6 582,688 + Synpcc7942_0594 0.88 -0.2 582,688 + Synpcc7942_0594 0.88 -0.7 582,688 + Synpcc7942_0594 0.88 -1.9 582,688 + Synpcc7942_0594 0.88 +0.2 582,696 - Synpcc7942_0594 0.89 -0.2 582,696 - Synpcc7942_0594 0.89 -2.6 582,698 + Synpcc7942_0594 0.89 -0.1 582,714 - -1.2 582,744 + -1.6 582,744 + +0.2 582,744 + +1.6 582,745 + +0.9 582,745 + +0.5 582,745 + -1.7 582,752 - -0.7 582,752 - +0.4 582,752 - -1.4 582,752 - +0.4 582,752 - -1.5 582,776 + +0.3 582,868 - -1.2 582,869 + -0.3 582,869 + +0.3 582,902 - +0.8 582,903 - +1.1 582,950 - Synpcc7942_0595 0.18 +0.2 582,963 - Synpcc7942_0595 0.21 -0.5 582,970 - Synpcc7942_0595 0.22 +0.4 582,971 + Synpcc7942_0595 0.22 -0.2 582,977 + Synpcc7942_0595 0.23 +0.2 583,022 + Synpcc7942_0595 0.31 +1.1 583,028 + Synpcc7942_0595 0.32 -0.1 583,117 + Synpcc7942_0595 0.49 -0.2 583,130 - Synpcc7942_0595 0.51 -0.5 583,139 - Synpcc7942_0595 0.53 +1.0 583,179 + Synpcc7942_0595 0.60 -2.1 583,195 + Synpcc7942_0595 0.63 -1.4 583,202 + Synpcc7942_0595 0.64 +1.7 583,203 - Synpcc7942_0595 0.64 +0.1 583,235 + Synpcc7942_0595 0.70 +0.0 583,235 + Synpcc7942_0595 0.70 +0.7 583,243 - Synpcc7942_0595 0.72 +0.5 583,243 - Synpcc7942_0595 0.72 -0.9 583,243 - Synpcc7942_0595 0.72 +0.7 583,255 - Synpcc7942_0595 0.74 -1.3 583,255 - Synpcc7942_0595 0.74 -0.1 583,257 + Synpcc7942_0595 0.74 +0.2 583,257 + Synpcc7942_0595 0.74 -0.2 583,330 + Synpcc7942_0595 0.87 -0.2 583,342 + Synpcc7942_0595 0.90 -2.1 583,355 - +0.2 583,423 + -2.0 583,429 + -0.7 583,436 - -0.2 583,436 - -0.1 583,460 + +0.6 583,469 + +1.5 583,548 + -2.0 583,556 - -0.4 583,558 + -1.9 583,590 + Synpcc7942_0596 0.10 -2.3 583,600 + Synpcc7942_0596 0.11 -2.3 583,609 + Synpcc7942_0596 0.12 -2.7 583,611 + Synpcc7942_0596 0.12 -1.6 583,677 - Synpcc7942_0596 0.19 -1.9 583,694 + Synpcc7942_0596 0.21 -0.8 583,741 + Synpcc7942_0596 0.26 -2.0 583,741 + Synpcc7942_0596 0.26 -3.3 583,749 - Synpcc7942_0596 0.27 -2.9 583,765 + Synpcc7942_0596 0.29 -2.5 583,773 - Synpcc7942_0596 0.30 -0.4 583,775 + Synpcc7942_0596 0.30 -2.9 583,781 + Synpcc7942_0596 0.31 -3.9 583,783 - Synpcc7942_0596 0.31 -1.1 583,783 - Synpcc7942_0596 0.31 -1.8 583,898 + Synpcc7942_0596 0.43 -3.0 583,908 - Synpcc7942_0596 0.44 -0.5 583,915 + Synpcc7942_0596 0.45 -1.1 583,918 - Synpcc7942_0596 0.45 -2.6 583,959 + Synpcc7942_0596 0.50 -3.3 583,967 - Synpcc7942_0596 0.50 -1.2 583,967 - Synpcc7942_0596 0.50 -3.4 583,967 - Synpcc7942_0596 0.50 -1.2 583,969 + Synpcc7942_0596 0.51 -3.1 583,970 + Synpcc7942_0596 0.51 -0.8 583,977 - Synpcc7942_0596 0.52 -1.1 583,986 - Synpcc7942_0596 0.53 -2.2 583,996 - Synpcc7942_0596 0.54 -4.5 583,996 - Synpcc7942_0596 0.54 -1.9 584,004 + Synpcc7942_0596 0.54 -2.0 584,037 + Synpcc7942_0596 0.58 -2.6 584,046 - Synpcc7942_0596 0.59 -2.2 584,046 - Synpcc7942_0596 0.59 -1.8 584,059 + Synpcc7942_0596 0.60 -1.9 584,108 + Synpcc7942_0596 0.66 -1.6 584,109 + Synpcc7942_0596 0.66 -0.3 584,136 + Synpcc7942_0596 0.69 -1.3 584,167 - Synpcc7942_0596 0.72 -1.4 584,171 + Synpcc7942_0596 0.72 -1.8 584,189 - Synpcc7942_0596 0.74 -4.6 584,191 + Synpcc7942_0596 0.74 -1.6 584,191 - Synpcc7942_0596 0.74 +0.5 584,208 + Synpcc7942_0596 0.76 -0.7 584,221 + Synpcc7942_0596 0.78 -1.5 584,221 + Synpcc7942_0596 0.78 -0.4 584,221 + Synpcc7942_0596 0.78 +0.4 584,221 + Synpcc7942_0596 0.78 -2.7 584,224 + Synpcc7942_0596 0.78 -0.6 584,249 + Synpcc7942_0596 0.81 -2.2 584,249 + Synpcc7942_0596 0.81 -0.8 584,281 + Synpcc7942_0596 0.84 -2.5 584,282 + Synpcc7942_0596 0.84 -2.2 584,290 - Synpcc7942_0596 0.85 -0.6 584,300 + Synpcc7942_0596 0.86 -1.9 584,309 + Synpcc7942_0596 0.87 -1.6 584,319 + Synpcc7942_0596 0.88 -0.5 584,327 - Synpcc7942_0596 0.89 -1.7 584,329 + Synpcc7942_0596 0.89 -2.8 584,337 - -1.9 584,343 + -2.8 584,348 + -2.6 584,382 + -2.8 584,387 + -0.6 584,407 + -1.6 584,422 + +0.6 584,422 + +0.5 584,423 + -3.0 585,272 + -0.6 585,272 + +0.4 585,272 + -1.4 585,280 - -0.1 585,280 - -0.1 585,329 - +0.3
Or see this region's nucleotide sequence