Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recA and Synpcc7942_0349 are separated by 114 nucleotides Synpcc7942_0349 and Synpcc7942_0350 are separated by 349 nucleotides
Synpcc7942_0348: recA - recombinase A, at 340,698 to 341,768
recA
Synpcc7942_0349: Synpcc7942_0349 - hypothetical protein, at 341,883 to 342,443
_0349
Synpcc7942_0350: Synpcc7942_0350 - ATPase, at 342,793 to 343,671
_0350
Position (kb) 341
342
343 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 341.765 kb on + strand at 341.800 kb on - strand at 341.838 kb on + strand at 341.851 kb on + strand at 341.851 kb on + strand at 341.859 kb on - strand at 341.859 kb on - strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.880 kb on + strand at 341.882 kb on + strand at 341.888 kb on - strand at 341.900 kb on - strand at 341.906 kb on - strand at 341.934 kb on - strand at 341.965 kb on + strand, within Synpcc7942_0349 at 341.965 kb on - strand, within Synpcc7942_0349 at 342.009 kb on + strand, within Synpcc7942_0349 at 342.019 kb on + strand, within Synpcc7942_0349 at 342.027 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.032 kb on - strand, within Synpcc7942_0349 at 342.073 kb on - strand, within Synpcc7942_0349 at 342.079 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.167 kb on + strand, within Synpcc7942_0349 at 342.170 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.175 kb on - strand, within Synpcc7942_0349 at 342.190 kb on + strand, within Synpcc7942_0349 at 342.198 kb on - strand, within Synpcc7942_0349 at 342.209 kb on + strand, within Synpcc7942_0349 at 342.285 kb on + strand, within Synpcc7942_0349 at 342.286 kb on - strand, within Synpcc7942_0349 at 342.344 kb on - strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.359 kb on + strand, within Synpcc7942_0349 at 342.393 kb on + strand at 342.450 kb on + strand at 342.450 kb on + strand at 342.458 kb on - strand at 342.473 kb on + strand at 342.473 kb on + strand at 342.475 kb on + strand at 342.488 kb on + strand at 342.529 kb on + strand at 342.544 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.549 kb on - strand at 342.556 kb on + strand at 342.559 kb on - strand at 342.564 kb on - strand at 342.569 kb on - strand at 342.592 kb on - strand at 342.610 kb on - strand at 342.647 kb on - strand at 342.647 kb on - strand at 342.689 kb on + strand at 342.689 kb on - strand at 342.694 kb on - strand at 342.694 kb on - strand at 342.699 kb on + strand at 342.706 kb on + strand at 342.706 kb on + strand at 342.709 kb on - strand at 342.711 kb on + strand at 342.711 kb on + strand at 342.719 kb on - strand at 342.719 kb on - strand at 342.731 kb on + strand at 342.774 kb on + strand at 342.800 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.801 kb on + strand at 342.811 kb on - strand at 342.835 kb on + strand at 342.845 kb on + strand at 342.872 kb on - strand at 342.875 kb on + strand at 342.901 kb on + strand, within Synpcc7942_0350 at 342.901 kb on - strand, within Synpcc7942_0350 at 342.949 kb on + strand, within Synpcc7942_0350 at 342.949 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.957 kb on - strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.959 kb on + strand, within Synpcc7942_0350 at 342.962 kb on - strand, within Synpcc7942_0350 at 342.966 kb on + strand, within Synpcc7942_0350 at 342.967 kb on - strand, within Synpcc7942_0350 at 342.981 kb on - strand, within Synpcc7942_0350 at 343.015 kb on - strand, within Synpcc7942_0350 at 343.048 kb on + strand, within Synpcc7942_0350 at 343.050 kb on - strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.074 kb on + strand, within Synpcc7942_0350 at 343.085 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.092 kb on + strand, within Synpcc7942_0350 at 343.095 kb on - strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.119 kb on + strand, within Synpcc7942_0350 at 343.126 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.127 kb on - strand, within Synpcc7942_0350 at 343.164 kb on + strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.172 kb on - strand, within Synpcc7942_0350 at 343.184 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.221 kb on + strand, within Synpcc7942_0350 at 343.237 kb on + strand, within Synpcc7942_0350 at 343.266 kb on - strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.268 kb on + strand, within Synpcc7942_0350 at 343.271 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand at 343.276 kb on - strand, within Synpcc7942_0350 at 343.276 kb on - strand, within Synpcc7942_0350 at 343.278 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.301 kb on + strand, within Synpcc7942_0350 at 343.309 kb on - strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.311 kb on + strand, within Synpcc7942_0350 at 343.319 kb on - strand, within Synpcc7942_0350 at 343.331 kb on - strand, within Synpcc7942_0350 at 343.355 kb on + strand, within Synpcc7942_0350 at 343.360 kb on + strand, within Synpcc7942_0350 at 343.361 kb on - strand, within Synpcc7942_0350 at 343.363 kb on - strand, within Synpcc7942_0350 at 343.407 kb on + strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.426 kb on - strand, within Synpcc7942_0350 at 343.433 kb on + strand, within Synpcc7942_0350
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 341,765 + +0.9 341,800 - +0.8 341,838 + -1.0 341,851 + -2.1 341,851 + -0.0 341,859 - -1.2 341,859 - -0.4 341,880 + -0.2 341,880 + -0.0 341,880 + -0.8 341,882 + -1.5 341,888 - -0.1 341,900 - -2.2 341,906 - -0.2 341,934 - +0.3 341,965 + Synpcc7942_0349 0.15 -1.8 341,965 - Synpcc7942_0349 0.15 -1.7 342,009 + Synpcc7942_0349 0.22 -2.3 342,019 + Synpcc7942_0349 0.24 -1.4 342,027 - Synpcc7942_0349 0.26 -1.8 342,032 - Synpcc7942_0349 0.27 -1.9 342,032 - Synpcc7942_0349 0.27 -2.1 342,073 - Synpcc7942_0349 0.34 -3.4 342,079 + Synpcc7942_0349 0.35 -2.8 342,167 + Synpcc7942_0349 0.51 -2.1 342,167 + Synpcc7942_0349 0.51 -1.7 342,170 - Synpcc7942_0349 0.51 -2.8 342,175 - Synpcc7942_0349 0.52 -1.1 342,175 - Synpcc7942_0349 0.52 -1.3 342,190 + Synpcc7942_0349 0.55 -1.4 342,198 - Synpcc7942_0349 0.56 -1.4 342,209 + Synpcc7942_0349 0.58 -3.1 342,285 + Synpcc7942_0349 0.72 -1.4 342,286 - Synpcc7942_0349 0.72 -2.5 342,344 - Synpcc7942_0349 0.82 -2.0 342,359 + Synpcc7942_0349 0.85 -2.2 342,359 + Synpcc7942_0349 0.85 -2.7 342,359 + Synpcc7942_0349 0.85 -6.0 342,393 + -2.4 342,450 + +0.8 342,450 + +1.0 342,458 - -0.4 342,473 + -1.8 342,473 + -0.5 342,475 + -0.2 342,488 + -0.1 342,529 + +2.2 342,544 - +0.9 342,549 - -0.8 342,549 - -3.0 342,549 - -2.1 342,556 + +0.3 342,559 - -0.2 342,564 - -3.4 342,569 - -0.1 342,592 - +1.3 342,610 - -0.3 342,647 - +0.7 342,647 - +0.2 342,689 + -0.5 342,689 - +0.6 342,694 - -0.4 342,694 - -0.2 342,699 + +1.0 342,706 + -0.8 342,706 + -1.8 342,709 - -0.6 342,711 + +1.1 342,711 + -1.0 342,719 - -3.3 342,719 - +0.5 342,731 + +0.6 342,774 + -1.5 342,800 + -0.2 342,801 + +0.7 342,801 + -1.0 342,801 + -0.3 342,811 - -0.8 342,835 + -1.6 342,845 + -4.1 342,872 - -0.8 342,875 + -0.6 342,901 + Synpcc7942_0350 0.12 +0.3 342,901 - Synpcc7942_0350 0.12 +0.2 342,949 + Synpcc7942_0350 0.18 -1.5 342,949 - Synpcc7942_0350 0.18 +1.5 342,957 - Synpcc7942_0350 0.19 +0.7 342,957 - Synpcc7942_0350 0.19 +1.2 342,959 + Synpcc7942_0350 0.19 -1.5 342,959 + Synpcc7942_0350 0.19 -0.8 342,959 + Synpcc7942_0350 0.19 +0.0 342,959 + Synpcc7942_0350 0.19 -0.4 342,962 - Synpcc7942_0350 0.19 -1.5 342,966 + Synpcc7942_0350 0.20 -0.2 342,967 - Synpcc7942_0350 0.20 -1.1 342,981 - Synpcc7942_0350 0.21 -1.1 343,015 - Synpcc7942_0350 0.25 -0.7 343,048 + Synpcc7942_0350 0.29 -0.3 343,050 - Synpcc7942_0350 0.29 +0.8 343,074 + Synpcc7942_0350 0.32 +0.5 343,074 + Synpcc7942_0350 0.32 -0.8 343,085 + Synpcc7942_0350 0.33 -0.2 343,092 + Synpcc7942_0350 0.34 -0.8 343,092 + Synpcc7942_0350 0.34 +0.3 343,095 - Synpcc7942_0350 0.34 +0.1 343,119 + Synpcc7942_0350 0.37 -1.0 343,119 + Synpcc7942_0350 0.37 +0.5 343,119 + Synpcc7942_0350 0.37 -0.7 343,126 - Synpcc7942_0350 0.38 +0.9 343,127 - Synpcc7942_0350 0.38 +0.2 343,127 - Synpcc7942_0350 0.38 -0.2 343,127 - Synpcc7942_0350 0.38 -0.0 343,164 + Synpcc7942_0350 0.42 -1.1 343,172 - Synpcc7942_0350 0.43 +0.3 343,172 - Synpcc7942_0350 0.43 -1.3 343,184 + Synpcc7942_0350 0.44 +1.2 343,221 + Synpcc7942_0350 0.49 -1.8 343,221 + Synpcc7942_0350 0.49 -2.0 343,221 + Synpcc7942_0350 0.49 +1.0 343,237 + Synpcc7942_0350 0.51 +0.9 343,266 - Synpcc7942_0350 0.54 +0.3 343,268 + Synpcc7942_0350 0.54 -1.0 343,268 + Synpcc7942_0350 0.54 +0.6 343,268 + Synpcc7942_0350 0.54 +0.2 343,268 + Synpcc7942_0350 0.54 +0.1 343,268 + Synpcc7942_0350 0.54 -0.3 343,268 + Synpcc7942_0350 0.54 -0.6 343,268 + Synpcc7942_0350 0.54 -1.2 343,268 + Synpcc7942_0350 0.54 +1.8 343,268 + Synpcc7942_0350 0.54 -1.4 343,268 + Synpcc7942_0350 0.54 -1.6 343,271 - Synpcc7942_0350 0.54 -2.2 343,276 - Synpcc7942_0350 0.55 +0.4 343,276 - Synpcc7942_0350 0.55 +0.9 343,276 - Synpcc7942_0350 0.55 -1.6 343,276 - +2.3 343,276 - Synpcc7942_0350 0.55 +0.5 343,276 - Synpcc7942_0350 0.55 -0.2 343,278 + Synpcc7942_0350 0.55 +0.9 343,301 + Synpcc7942_0350 0.58 +0.5 343,301 + Synpcc7942_0350 0.58 -1.4 343,309 - Synpcc7942_0350 0.59 +0.8 343,311 + Synpcc7942_0350 0.59 -1.5 343,311 + Synpcc7942_0350 0.59 +0.0 343,311 + Synpcc7942_0350 0.59 +0.0 343,319 - Synpcc7942_0350 0.60 -0.4 343,331 - Synpcc7942_0350 0.61 -0.7 343,355 + Synpcc7942_0350 0.64 +1.5 343,360 + Synpcc7942_0350 0.65 +0.9 343,361 - Synpcc7942_0350 0.65 -1.5 343,363 - Synpcc7942_0350 0.65 +0.6 343,407 + Synpcc7942_0350 0.70 -0.7 343,426 - Synpcc7942_0350 0.72 -0.2 343,426 - Synpcc7942_0350 0.72 -1.9 343,426 - Synpcc7942_0350 0.72 -1.1 343,433 + Synpcc7942_0350 0.73 +0.9
Or see this region's nucleotide sequence