Experiment: BG11 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gidB and Synpcc7942_0268 overlap by 4 nucleotides Synpcc7942_0268 and Synpcc7942_0269 are separated by 11 nucleotides Synpcc7942_0269 and Synpcc7942_0270 are separated by 117 nucleotides
Synpcc7942_0267: gidB - glucose-inhibited division protein B, at 263,757 to 264,485
gidB
Synpcc7942_0268: Synpcc7942_0268 - hypothetical protein, at 264,482 to 264,964
_0268
Synpcc7942_0269: Synpcc7942_0269 - hypothetical protein, at 264,976 to 265,857
_0269
Synpcc7942_0270: Synpcc7942_0270 - TPR repeat, at 265,975 to 267,168
_0270
Position (kb) 264
265
266 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 264.013 kb on + strand, within gidB at 264.021 kb on - strand, within gidB at 264.041 kb on + strand, within gidB at 264.055 kb on - strand, within gidB at 264.060 kb on - strand, within gidB at 264.075 kb on - strand, within gidB at 264.100 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on + strand, within gidB at 264.119 kb on - strand, within gidB at 264.153 kb on + strand, within gidB at 264.156 kb on + strand, within gidB at 264.186 kb on + strand, within gidB at 264.233 kb on + strand, within gidB at 264.234 kb on + strand, within gidB at 264.240 kb on - strand, within gidB at 264.244 kb on + strand, within gidB at 264.245 kb on - strand, within gidB at 264.246 kb on - strand, within gidB at 264.252 kb on - strand, within gidB at 264.278 kb on + strand, within gidB at 264.281 kb on - strand, within gidB at 264.283 kb on + strand, within gidB at 264.322 kb on + strand, within gidB at 264.330 kb on - strand, within gidB at 264.377 kb on + strand, within gidB at 264.383 kb on + strand, within gidB at 264.396 kb on - strand, within gidB at 264.401 kb on + strand, within gidB at 264.401 kb on + strand, within gidB at 264.401 kb on + strand, within gidB at 264.403 kb on + strand, within gidB at 264.413 kb on + strand at 264.436 kb on - strand at 264.459 kb on - strand at 264.466 kb on + strand at 264.474 kb on - strand at 264.497 kb on - strand at 264.509 kb on + strand at 264.522 kb on + strand at 264.529 kb on + strand at 264.535 kb on - strand, within Synpcc7942_0268 at 264.544 kb on + strand, within Synpcc7942_0268 at 264.553 kb on + strand, within Synpcc7942_0268 at 264.553 kb on + strand, within Synpcc7942_0268 at 264.579 kb on - strand, within Synpcc7942_0268 at 264.595 kb on - strand, within Synpcc7942_0268 at 264.609 kb on + strand, within Synpcc7942_0268 at 264.609 kb on + strand, within Synpcc7942_0268 at 264.617 kb on - strand, within Synpcc7942_0268 at 264.617 kb on - strand, within Synpcc7942_0268 at 264.622 kb on - strand, within Synpcc7942_0268 at 264.624 kb on + strand, within Synpcc7942_0268 at 264.632 kb on - strand, within Synpcc7942_0268 at 264.652 kb on + strand, within Synpcc7942_0268 at 264.652 kb on + strand, within Synpcc7942_0268 at 264.660 kb on - strand, within Synpcc7942_0268 at 264.680 kb on + strand, within Synpcc7942_0268 at 264.695 kb on + strand, within Synpcc7942_0268 at 264.715 kb on + strand, within Synpcc7942_0268 at 264.762 kb on - strand, within Synpcc7942_0268 at 264.794 kb on - strand, within Synpcc7942_0268 at 264.813 kb on + strand, within Synpcc7942_0268 at 264.821 kb on - strand, within Synpcc7942_0268 at 264.835 kb on + strand, within Synpcc7942_0268 at 264.835 kb on + strand, within Synpcc7942_0268 at 264.839 kb on - strand, within Synpcc7942_0268 at 264.849 kb on + strand, within Synpcc7942_0268 at 264.857 kb on - strand, within Synpcc7942_0268 at 264.857 kb on - strand, within Synpcc7942_0268 at 264.859 kb on + strand, within Synpcc7942_0268 at 264.871 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.872 kb on + strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.880 kb on - strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.883 kb on + strand, within Synpcc7942_0268 at 264.888 kb on + strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.891 kb on - strand, within Synpcc7942_0268 at 264.893 kb on + strand, within Synpcc7942_0268 at 264.922 kb on - strand at 264.940 kb on + strand at 264.940 kb on + strand at 264.940 kb on + strand at 264.948 kb on - strand at 264.968 kb on + strand at 265.081 kb on - strand, within Synpcc7942_0269 at 265.103 kb on + strand, within Synpcc7942_0269 at 265.119 kb on + strand, within Synpcc7942_0269 at 265.148 kb on - strand, within Synpcc7942_0269 at 265.148 kb on - strand, within Synpcc7942_0269 at 265.175 kb on - strand, within Synpcc7942_0269 at 265.209 kb on + strand, within Synpcc7942_0269 at 265.218 kb on + strand, within Synpcc7942_0269 at 265.226 kb on - strand, within Synpcc7942_0269 at 265.231 kb on + strand at 265.280 kb on + strand, within Synpcc7942_0269 at 265.287 kb on - strand, within Synpcc7942_0269 at 265.322 kb on + strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.330 kb on - strand, within Synpcc7942_0269 at 265.371 kb on - strand, within Synpcc7942_0269 at 265.377 kb on - strand, within Synpcc7942_0269 at 265.385 kb on + strand, within Synpcc7942_0269 at 265.395 kb on + strand, within Synpcc7942_0269 at 265.428 kb on + strand, within Synpcc7942_0269 at 265.436 kb on - strand, within Synpcc7942_0269 at 265.455 kb on + strand, within Synpcc7942_0269 at 265.463 kb on - strand, within Synpcc7942_0269 at 265.473 kb on + strand, within Synpcc7942_0269 at 265.478 kb on - strand, within Synpcc7942_0269 at 265.492 kb on + strand, within Synpcc7942_0269 at 265.492 kb on + strand, within Synpcc7942_0269 at 265.492 kb on + strand, within Synpcc7942_0269 at 265.500 kb on - strand, within Synpcc7942_0269 at 265.500 kb on - strand, within Synpcc7942_0269 at 265.521 kb on - strand, within Synpcc7942_0269 at 265.548 kb on + strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.559 kb on - strand, within Synpcc7942_0269 at 265.593 kb on + strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.626 kb on - strand, within Synpcc7942_0269 at 265.649 kb on + strand, within Synpcc7942_0269 at 265.653 kb on + strand, within Synpcc7942_0269 at 265.654 kb on + strand, within Synpcc7942_0269 at 265.661 kb on - strand, within Synpcc7942_0269 at 265.661 kb on - strand, within Synpcc7942_0269 at 265.664 kb on + strand, within Synpcc7942_0269 at 265.664 kb on + strand, within Synpcc7942_0269 at 265.664 kb on + strand, within Synpcc7942_0269 at 265.741 kb on + strand, within Synpcc7942_0269 at 265.741 kb on + strand, within Synpcc7942_0269 at 265.741 kb on + strand at 265.749 kb on - strand, within Synpcc7942_0269 at 265.763 kb on - strand, within Synpcc7942_0269 at 265.805 kb on - strand at 265.815 kb on - strand at 265.853 kb on + strand at 265.869 kb on + strand at 265.875 kb on - strand at 265.877 kb on - strand at 265.911 kb on + strand at 265.911 kb on + strand at 265.911 kb on + strand at 265.919 kb on - strand at 265.924 kb on - strand at 265.936 kb on - strand at 265.945 kb on + strand at 265.948 kb on - strand at 265.948 kb on - strand at 265.959 kb on - strand at 265.978 kb on + strand at 266.044 kb on + strand at 266.063 kb on + strand at 266.076 kb on + strand at 266.076 kb on + strand at 266.084 kb on - strand at 266.084 kb on - strand at 266.107 kb on - strand, within Synpcc7942_0270 at 266.131 kb on - strand at 266.131 kb on - strand, within Synpcc7942_0270 at 266.133 kb on + strand, within Synpcc7942_0270 at 266.133 kb on + strand, within Synpcc7942_0270 at 266.141 kb on - strand, within Synpcc7942_0270 at 266.141 kb on - strand, within Synpcc7942_0270 at 266.227 kb on - strand, within Synpcc7942_0270 at 266.266 kb on + strand, within Synpcc7942_0270 at 266.307 kb on - strand, within Synpcc7942_0270 at 266.317 kb on - strand, within Synpcc7942_0270 at 266.388 kb on + strand, within Synpcc7942_0270 at 266.398 kb on - strand, within Synpcc7942_0270 at 266.400 kb on - strand, within Synpcc7942_0270 at 266.404 kb on + strand, within Synpcc7942_0270 at 266.416 kb on - strand, within Synpcc7942_0270 at 266.425 kb on - strand, within Synpcc7942_0270 at 266.457 kb on + strand, within Synpcc7942_0270 at 266.496 kb on - strand, within Synpcc7942_0270 at 266.576 kb on + strand, within Synpcc7942_0270 at 266.584 kb on - strand, within Synpcc7942_0270 at 266.586 kb on - strand, within Synpcc7942_0270 at 266.586 kb on - strand, within Synpcc7942_0270 at 266.591 kb on - strand, within Synpcc7942_0270 at 266.611 kb on + strand, within Synpcc7942_0270 at 266.643 kb on - strand, within Synpcc7942_0270 at 266.690 kb on + strand, within Synpcc7942_0270 at 266.695 kb on + strand, within Synpcc7942_0270 at 266.751 kb on + strand, within Synpcc7942_0270 at 266.778 kb on - strand, within Synpcc7942_0270 at 266.815 kb on - strand, within Synpcc7942_0270 at 266.821 kb on - strand, within Synpcc7942_0270 at 266.837 kb on - strand, within Synpcc7942_0270
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrite 20 mM remove 264,013 + gidB Synpcc7942_0267 0.35 -1.0 264,021 - gidB Synpcc7942_0267 0.36 -2.2 264,041 + gidB Synpcc7942_0267 0.39 -0.5 264,055 - gidB Synpcc7942_0267 0.41 -2.9 264,060 - gidB Synpcc7942_0267 0.42 -1.2 264,075 - gidB Synpcc7942_0267 0.44 -2.7 264,100 + gidB Synpcc7942_0267 0.47 -1.2 264,119 + gidB Synpcc7942_0267 0.50 -0.6 264,119 + gidB Synpcc7942_0267 0.50 -3.2 264,119 - gidB Synpcc7942_0267 0.50 -1.3 264,153 + gidB Synpcc7942_0267 0.54 -0.3 264,156 + gidB Synpcc7942_0267 0.55 -3.2 264,186 + gidB Synpcc7942_0267 0.59 -2.1 264,233 + gidB Synpcc7942_0267 0.65 -4.0 264,234 + gidB Synpcc7942_0267 0.65 -1.0 264,240 - gidB Synpcc7942_0267 0.66 -2.2 264,244 + gidB Synpcc7942_0267 0.67 -0.5 264,245 - gidB Synpcc7942_0267 0.67 -0.2 264,246 - gidB Synpcc7942_0267 0.67 -0.5 264,252 - gidB Synpcc7942_0267 0.68 -2.2 264,278 + gidB Synpcc7942_0267 0.71 -0.6 264,281 - gidB Synpcc7942_0267 0.72 -0.2 264,283 + gidB Synpcc7942_0267 0.72 -0.6 264,322 + gidB Synpcc7942_0267 0.78 -2.5 264,330 - gidB Synpcc7942_0267 0.79 -0.5 264,377 + gidB Synpcc7942_0267 0.85 -2.1 264,383 + gidB Synpcc7942_0267 0.86 -0.5 264,396 - gidB Synpcc7942_0267 0.88 -0.6 264,401 + gidB Synpcc7942_0267 0.88 -0.5 264,401 + gidB Synpcc7942_0267 0.88 -3.2 264,401 + gidB Synpcc7942_0267 0.88 -1.7 264,403 + gidB Synpcc7942_0267 0.89 -2.4 264,413 + -1.3 264,436 - -1.1 264,459 - -2.5 264,466 + +0.7 264,474 - -1.8 264,497 - +0.6 264,509 + +0.8 264,522 + -2.2 264,529 + -2.4 264,535 - Synpcc7942_0268 0.11 +0.0 264,544 + Synpcc7942_0268 0.13 -1.3 264,553 + Synpcc7942_0268 0.15 -0.1 264,553 + Synpcc7942_0268 0.15 -1.7 264,579 - Synpcc7942_0268 0.20 -0.6 264,595 - Synpcc7942_0268 0.23 +0.8 264,609 + Synpcc7942_0268 0.26 +0.8 264,609 + Synpcc7942_0268 0.26 -0.3 264,617 - Synpcc7942_0268 0.28 +0.7 264,617 - Synpcc7942_0268 0.28 -0.5 264,622 - Synpcc7942_0268 0.29 -0.7 264,624 + Synpcc7942_0268 0.29 -0.1 264,632 - Synpcc7942_0268 0.31 +0.8 264,652 + Synpcc7942_0268 0.35 +2.0 264,652 + Synpcc7942_0268 0.35 -0.2 264,660 - Synpcc7942_0268 0.37 -1.0 264,680 + Synpcc7942_0268 0.41 +0.9 264,695 + Synpcc7942_0268 0.44 +0.8 264,715 + Synpcc7942_0268 0.48 -0.1 264,762 - Synpcc7942_0268 0.58 -0.1 264,794 - Synpcc7942_0268 0.65 +0.1 264,813 + Synpcc7942_0268 0.69 -0.0 264,821 - Synpcc7942_0268 0.70 -0.0 264,835 + Synpcc7942_0268 0.73 +0.6 264,835 + Synpcc7942_0268 0.73 -1.4 264,839 - Synpcc7942_0268 0.74 -0.1 264,849 + Synpcc7942_0268 0.76 +0.3 264,857 - Synpcc7942_0268 0.78 -0.3 264,857 - Synpcc7942_0268 0.78 -0.3 264,859 + Synpcc7942_0268 0.78 +0.4 264,871 + Synpcc7942_0268 0.81 -1.1 264,872 + Synpcc7942_0268 0.81 +0.4 264,872 + Synpcc7942_0268 0.81 +1.3 264,872 + Synpcc7942_0268 0.81 +0.4 264,872 + Synpcc7942_0268 0.81 -1.4 264,872 + Synpcc7942_0268 0.81 -2.0 264,872 + Synpcc7942_0268 0.81 +0.1 264,872 + Synpcc7942_0268 0.81 -1.4 264,880 - Synpcc7942_0268 0.82 -0.4 264,880 - Synpcc7942_0268 0.82 -1.0 264,880 - Synpcc7942_0268 0.82 +0.3 264,880 - Synpcc7942_0268 0.82 +1.3 264,880 - Synpcc7942_0268 0.82 -3.0 264,880 - Synpcc7942_0268 0.82 +1.2 264,880 - Synpcc7942_0268 0.82 -1.0 264,880 - Synpcc7942_0268 0.82 -2.8 264,880 - Synpcc7942_0268 0.82 -0.3 264,883 + Synpcc7942_0268 0.83 -1.1 264,883 + Synpcc7942_0268 0.83 -1.0 264,883 + Synpcc7942_0268 0.83 -0.2 264,888 + Synpcc7942_0268 0.84 -0.8 264,891 - Synpcc7942_0268 0.85 -0.7 264,891 - Synpcc7942_0268 0.85 +0.9 264,891 - Synpcc7942_0268 0.85 +1.1 264,891 - Synpcc7942_0268 0.85 -0.3 264,893 + Synpcc7942_0268 0.85 -0.6 264,922 - -0.5 264,940 + -0.4 264,940 + +0.8 264,940 + -0.1 264,948 - -1.0 264,968 + -0.4 265,081 - Synpcc7942_0269 0.12 +0.0 265,103 + Synpcc7942_0269 0.14 +0.6 265,119 + Synpcc7942_0269 0.16 +0.1 265,148 - Synpcc7942_0269 0.20 -1.0 265,148 - Synpcc7942_0269 0.20 +0.3 265,175 - Synpcc7942_0269 0.23 -0.9 265,209 + Synpcc7942_0269 0.26 +0.5 265,218 + Synpcc7942_0269 0.27 -2.7 265,226 - Synpcc7942_0269 0.28 -0.7 265,231 + +1.6 265,280 + Synpcc7942_0269 0.34 +0.1 265,287 - Synpcc7942_0269 0.35 -0.5 265,322 + Synpcc7942_0269 0.39 -0.6 265,330 - Synpcc7942_0269 0.40 -0.0 265,330 - Synpcc7942_0269 0.40 -0.5 265,330 - Synpcc7942_0269 0.40 -0.4 265,330 - Synpcc7942_0269 0.40 +0.3 265,371 - Synpcc7942_0269 0.45 +0.3 265,377 - Synpcc7942_0269 0.45 +0.0 265,385 + Synpcc7942_0269 0.46 -1.5 265,395 + Synpcc7942_0269 0.48 -0.6 265,428 + Synpcc7942_0269 0.51 -0.6 265,436 - Synpcc7942_0269 0.52 -1.2 265,455 + Synpcc7942_0269 0.54 -0.8 265,463 - Synpcc7942_0269 0.55 +1.8 265,473 + Synpcc7942_0269 0.56 -1.6 265,478 - Synpcc7942_0269 0.57 +1.2 265,492 + Synpcc7942_0269 0.59 -0.2 265,492 + Synpcc7942_0269 0.59 +0.1 265,492 + Synpcc7942_0269 0.59 -1.6 265,500 - Synpcc7942_0269 0.59 +0.2 265,500 - Synpcc7942_0269 0.59 -1.4 265,521 - Synpcc7942_0269 0.62 +0.5 265,548 + Synpcc7942_0269 0.65 +0.6 265,559 - Synpcc7942_0269 0.66 +0.4 265,559 - Synpcc7942_0269 0.66 -0.1 265,559 - Synpcc7942_0269 0.66 -1.7 265,559 - Synpcc7942_0269 0.66 +1.6 265,593 + Synpcc7942_0269 0.70 +0.5 265,626 - Synpcc7942_0269 0.74 -2.0 265,626 - Synpcc7942_0269 0.74 +0.4 265,626 - Synpcc7942_0269 0.74 +0.4 265,626 - Synpcc7942_0269 0.74 +0.2 265,626 - Synpcc7942_0269 0.74 +0.2 265,626 - Synpcc7942_0269 0.74 -1.3 265,626 - Synpcc7942_0269 0.74 +0.4 265,649 + Synpcc7942_0269 0.76 -0.5 265,653 + Synpcc7942_0269 0.77 -0.4 265,654 + Synpcc7942_0269 0.77 +0.6 265,661 - Synpcc7942_0269 0.78 -1.5 265,661 - Synpcc7942_0269 0.78 -0.0 265,664 + Synpcc7942_0269 0.78 +0.4 265,664 + Synpcc7942_0269 0.78 +0.9 265,664 + Synpcc7942_0269 0.78 -0.2 265,741 + Synpcc7942_0269 0.87 +0.4 265,741 + Synpcc7942_0269 0.87 +0.3 265,741 + +0.5 265,749 - Synpcc7942_0269 0.88 -1.1 265,763 - Synpcc7942_0269 0.89 -0.5 265,805 - -1.9 265,815 - +0.4 265,853 + +1.1 265,869 + +0.4 265,875 - -1.3 265,877 - +0.7 265,911 + -0.3 265,911 + -0.2 265,911 + -0.5 265,919 - -0.9 265,924 - -0.4 265,936 - -0.5 265,945 + -0.0 265,948 - -0.5 265,948 - +1.1 265,959 - -0.2 265,978 + +0.4 266,044 + +0.2 266,063 + +0.6 266,076 + +0.3 266,076 + -0.2 266,084 - -0.8 266,084 - -0.7 266,107 - Synpcc7942_0270 0.11 -2.1 266,131 - +0.8 266,131 - Synpcc7942_0270 0.13 +0.3 266,133 + Synpcc7942_0270 0.13 +0.3 266,133 + Synpcc7942_0270 0.13 -0.6 266,141 - Synpcc7942_0270 0.14 -1.4 266,141 - Synpcc7942_0270 0.14 -0.2 266,227 - Synpcc7942_0270 0.21 -1.1 266,266 + Synpcc7942_0270 0.24 -0.6 266,307 - Synpcc7942_0270 0.28 -0.1 266,317 - Synpcc7942_0270 0.29 +0.1 266,388 + Synpcc7942_0270 0.35 +0.5 266,398 - Synpcc7942_0270 0.35 -2.1 266,400 - Synpcc7942_0270 0.36 +1.4 266,404 + Synpcc7942_0270 0.36 +0.0 266,416 - Synpcc7942_0270 0.37 +0.1 266,425 - Synpcc7942_0270 0.38 +1.6 266,457 + Synpcc7942_0270 0.40 -0.2 266,496 - Synpcc7942_0270 0.44 -0.4 266,576 + Synpcc7942_0270 0.50 -2.1 266,584 - Synpcc7942_0270 0.51 +1.3 266,586 - Synpcc7942_0270 0.51 +0.7 266,586 - Synpcc7942_0270 0.51 -0.6 266,591 - Synpcc7942_0270 0.52 -0.5 266,611 + Synpcc7942_0270 0.53 +0.9 266,643 - Synpcc7942_0270 0.56 -0.1 266,690 + Synpcc7942_0270 0.60 -3.1 266,695 + Synpcc7942_0270 0.60 +0.2 266,751 + Synpcc7942_0270 0.65 -1.4 266,778 - Synpcc7942_0270 0.67 -0.1 266,815 - Synpcc7942_0270 0.70 -1.5 266,821 - Synpcc7942_0270 0.71 -1.7 266,837 - Synpcc7942_0270 0.72 -0.2
Or see this region's nucleotide sequence