Experiment: Cerium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5737 and Pf6N2E2_5738 are separated by 11 nucleotides Pf6N2E2_5738 and Pf6N2E2_5739 overlap by 4 nucleotides Pf6N2E2_5739 and Pf6N2E2_5740 overlap by 19 nucleotides
Pf6N2E2_5737 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 6,554,248 to 6,554,859
_5737
Pf6N2E2_5738 - Cobyrinic acid A,C-diamide synthase, at 6,554,871 to 6,556,187
_5738
Pf6N2E2_5739 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 6,556,184 to 6,556,834
_5739
Pf6N2E2_5740 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 6,556,816 to 6,557,739
_5740
Position (kb)
6554
6555
6556
6557 Strain fitness (log2 ratio)
-2
-1
0
1 at 6553.901 kb on + strand at 6553.902 kb on - strand at 6553.928 kb on + strand at 6553.929 kb on - strand at 6554.055 kb on + strand at 6554.055 kb on + strand at 6554.056 kb on - strand at 6554.056 kb on - strand at 6554.056 kb on - strand at 6554.056 kb on - strand at 6554.074 kb on + strand at 6554.075 kb on - strand at 6554.075 kb on - strand at 6554.677 kb on + strand, within Pf6N2E2_5737 at 6554.983 kb on + strand at 6555.054 kb on + strand, within Pf6N2E2_5738 at 6555.054 kb on + strand, within Pf6N2E2_5738 at 6555.055 kb on - strand, within Pf6N2E2_5738 at 6555.055 kb on - strand, within Pf6N2E2_5738 at 6555.624 kb on + strand, within Pf6N2E2_5738 at 6555.624 kb on + strand, within Pf6N2E2_5738 at 6555.625 kb on - strand, within Pf6N2E2_5738 at 6555.625 kb on - strand, within Pf6N2E2_5738 at 6555.625 kb on - strand, within Pf6N2E2_5738 at 6555.721 kb on - strand, within Pf6N2E2_5738 at 6555.839 kb on + strand, within Pf6N2E2_5738 at 6555.846 kb on + strand, within Pf6N2E2_5738 at 6555.846 kb on + strand, within Pf6N2E2_5738 at 6555.846 kb on + strand, within Pf6N2E2_5738 at 6555.847 kb on - strand, within Pf6N2E2_5738 at 6555.847 kb on - strand, within Pf6N2E2_5738 at 6555.847 kb on - strand, within Pf6N2E2_5738 at 6555.989 kb on + strand, within Pf6N2E2_5738 at 6555.989 kb on + strand, within Pf6N2E2_5738 at 6555.990 kb on - strand, within Pf6N2E2_5738 at 6555.993 kb on + strand, within Pf6N2E2_5738 at 6555.993 kb on + strand, within Pf6N2E2_5738 at 6555.993 kb on + strand, within Pf6N2E2_5738 at 6555.993 kb on + strand, within Pf6N2E2_5738 at 6555.993 kb on + strand, within Pf6N2E2_5738 at 6555.993 kb on + strand, within Pf6N2E2_5738 at 6555.994 kb on - strand, within Pf6N2E2_5738 at 6555.994 kb on - strand, within Pf6N2E2_5738 at 6555.994 kb on - strand, within Pf6N2E2_5738 at 6555.994 kb on - strand, within Pf6N2E2_5738 at 6555.994 kb on - strand, within Pf6N2E2_5738 at 6556.044 kb on - strand, within Pf6N2E2_5738 at 6556.104 kb on + strand at 6556.105 kb on - strand at 6556.105 kb on - strand at 6556.105 kb on - strand at 6556.105 kb on - strand at 6556.105 kb on - strand at 6556.105 kb on - strand at 6556.105 kb on - strand at 6556.226 kb on + strand at 6556.713 kb on + strand, within Pf6N2E2_5739 at 6556.743 kb on - strand, within Pf6N2E2_5739 at 6556.805 kb on + strand at 6556.805 kb on + strand at 6556.805 kb on + strand at 6556.805 kb on + strand at 6557.084 kb on - strand, within Pf6N2E2_5740
Per-strain Table
Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M remove 6,553,901 + -0.8 6,553,902 - +0.4 6,553,928 + +0.8 6,553,929 - +0.2 6,554,055 + +0.4 6,554,055 + +1.2 6,554,056 - +0.6 6,554,056 - -2.3 6,554,056 - -1.7 6,554,056 - -0.1 6,554,074 + +0.2 6,554,075 - -1.4 6,554,075 - -0.7 6,554,677 + Pf6N2E2_5737 0.70 -0.7 6,554,983 + +0.3 6,555,054 + Pf6N2E2_5738 0.14 -0.4 6,555,054 + Pf6N2E2_5738 0.14 -0.2 6,555,055 - Pf6N2E2_5738 0.14 -0.1 6,555,055 - Pf6N2E2_5738 0.14 -0.7 6,555,624 + Pf6N2E2_5738 0.57 -1.4 6,555,624 + Pf6N2E2_5738 0.57 -1.0 6,555,625 - Pf6N2E2_5738 0.57 +0.1 6,555,625 - Pf6N2E2_5738 0.57 -1.3 6,555,625 - Pf6N2E2_5738 0.57 -0.0 6,555,721 - Pf6N2E2_5738 0.65 -0.6 6,555,839 + Pf6N2E2_5738 0.74 +0.2 6,555,846 + Pf6N2E2_5738 0.74 -0.3 6,555,846 + Pf6N2E2_5738 0.74 +0.6 6,555,846 + Pf6N2E2_5738 0.74 -1.5 6,555,847 - Pf6N2E2_5738 0.74 -1.1 6,555,847 - Pf6N2E2_5738 0.74 -0.7 6,555,847 - Pf6N2E2_5738 0.74 -0.3 6,555,989 + Pf6N2E2_5738 0.85 +1.7 6,555,989 + Pf6N2E2_5738 0.85 -1.5 6,555,990 - Pf6N2E2_5738 0.85 -1.3 6,555,993 + Pf6N2E2_5738 0.85 -0.3 6,555,993 + Pf6N2E2_5738 0.85 -0.5 6,555,993 + Pf6N2E2_5738 0.85 +0.7 6,555,993 + Pf6N2E2_5738 0.85 -0.9 6,555,993 + Pf6N2E2_5738 0.85 +0.2 6,555,993 + Pf6N2E2_5738 0.85 -0.1 6,555,994 - Pf6N2E2_5738 0.85 -1.1 6,555,994 - Pf6N2E2_5738 0.85 +0.3 6,555,994 - Pf6N2E2_5738 0.85 -2.1 6,555,994 - Pf6N2E2_5738 0.85 +1.5 6,555,994 - Pf6N2E2_5738 0.85 -0.6 6,556,044 - Pf6N2E2_5738 0.89 +0.2 6,556,104 + -0.1 6,556,105 - -0.7 6,556,105 - +0.3 6,556,105 - -0.1 6,556,105 - -0.4 6,556,105 - +0.4 6,556,105 - -0.1 6,556,105 - +0.5 6,556,226 + +0.1 6,556,713 + Pf6N2E2_5739 0.81 +0.3 6,556,743 - Pf6N2E2_5739 0.86 -1.1 6,556,805 + +1.3 6,556,805 + +0.1 6,556,805 + -0.3 6,556,805 + +0.6 6,557,084 - Pf6N2E2_5740 0.29 -0.1
Or see this region's nucleotide sequence