Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4905

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4904 and Pf6N2E2_4905 are separated by 155 nucleotidesPf6N2E2_4905 and Pf6N2E2_4906 overlap by 15 nucleotidesPf6N2E2_4906 and Pf6N2E2_4907 are separated by 149 nucleotides Pf6N2E2_4904 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 5,657,094 to 5,659,145 _4904 Pf6N2E2_4905 - Lhr-like helicases, at 5,659,301 to 5,663,584 _4905 Pf6N2E2_4906 - hypothetical protein, at 5,663,570 to 5,663,692 _4906 Pf6N2E2_4907 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 5,663,842 to 5,664,711 _4907 Position (kb) 5659 5660 5661 5662 5663 5664Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5658.825 kb on + strand, within Pf6N2E2_4904at 5658.825 kb on + strand, within Pf6N2E2_4904at 5658.825 kb on + strand, within Pf6N2E2_4904at 5658.825 kb on + strand, within Pf6N2E2_4904at 5658.825 kb on + strand, within Pf6N2E2_4904at 5658.826 kb on - strand, within Pf6N2E2_4904at 5658.826 kb on - strand, within Pf6N2E2_4904at 5658.826 kb on - strand, within Pf6N2E2_4904at 5658.826 kb on - strand, within Pf6N2E2_4904at 5658.826 kb on - strand, within Pf6N2E2_4904at 5658.826 kb on - strandat 5659.002 kb on + strandat 5659.002 kb on + strandat 5659.003 kb on - strandat 5659.003 kb on - strandat 5659.003 kb on - strandat 5659.080 kb on + strandat 5659.148 kb on + strandat 5659.148 kb on + strandat 5659.148 kb on + strandat 5659.149 kb on - strandat 5659.235 kb on + strandat 5659.235 kb on + strandat 5659.235 kb on + strandat 5659.235 kb on + strandat 5659.235 kb on + strandat 5659.236 kb on - strandat 5659.236 kb on - strandat 5659.236 kb on - strandat 5659.251 kb on + strandat 5659.251 kb on + strandat 5659.297 kb on + strandat 5659.297 kb on + strandat 5659.297 kb on + strandat 5659.297 kb on + strandat 5659.298 kb on - strandat 5659.298 kb on - strandat 5659.298 kb on - strandat 5659.298 kb on - strandat 5659.298 kb on - strandat 5659.298 kb on - strandat 5659.298 kb on - strandat 5659.321 kb on + strandat 5659.321 kb on + strandat 5659.322 kb on - strandat 5659.322 kb on - strandat 5659.413 kb on + strandat 5659.413 kb on + strandat 5659.413 kb on + strandat 5659.414 kb on - strandat 5659.414 kb on - strandat 5659.533 kb on - strandat 5659.714 kb on - strandat 5660.250 kb on + strand, within Pf6N2E2_4905at 5660.250 kb on + strand, within Pf6N2E2_4905at 5660.251 kb on - strand, within Pf6N2E2_4905at 5660.251 kb on - strand, within Pf6N2E2_4905at 5660.251 kb on - strand, within Pf6N2E2_4905at 5660.251 kb on - strand, within Pf6N2E2_4905at 5660.454 kb on + strand, within Pf6N2E2_4905at 5660.455 kb on - strand, within Pf6N2E2_4905at 5660.535 kb on + strand, within Pf6N2E2_4905at 5660.535 kb on + strand, within Pf6N2E2_4905at 5660.535 kb on + strand, within Pf6N2E2_4905at 5660.535 kb on + strand, within Pf6N2E2_4905at 5660.535 kb on + strand, within Pf6N2E2_4905at 5660.536 kb on - strand, within Pf6N2E2_4905at 5660.536 kb on - strand, within Pf6N2E2_4905at 5660.536 kb on - strand, within Pf6N2E2_4905at 5660.536 kb on - strand, within Pf6N2E2_4905at 5660.536 kb on - strand, within Pf6N2E2_4905at 5660.536 kb on - strand, within Pf6N2E2_4905at 5660.536 kb on - strand, within Pf6N2E2_4905at 5661.078 kb on + strand, within Pf6N2E2_4905at 5661.078 kb on + strand, within Pf6N2E2_4905at 5661.079 kb on - strand, within Pf6N2E2_4905at 5661.997 kb on + strand, within Pf6N2E2_4905at 5661.997 kb on + strand, within Pf6N2E2_4905at 5661.997 kb on + strand, within Pf6N2E2_4905at 5661.997 kb on + strand, within Pf6N2E2_4905at 5661.997 kb on + strand, within Pf6N2E2_4905at 5661.998 kb on - strand, within Pf6N2E2_4905at 5661.998 kb on - strand, within Pf6N2E2_4905at 5662.095 kb on + strand, within Pf6N2E2_4905at 5662.096 kb on - strand, within Pf6N2E2_4905at 5662.096 kb on - strand, within Pf6N2E2_4905at 5662.195 kb on - strand, within Pf6N2E2_4905at 5662.258 kb on - strand, within Pf6N2E2_4905at 5662.526 kb on + strand, within Pf6N2E2_4905at 5662.622 kb on + strand, within Pf6N2E2_4905at 5662.622 kb on + strand, within Pf6N2E2_4905at 5662.623 kb on - strand, within Pf6N2E2_4905at 5662.819 kb on - strand, within Pf6N2E2_4905at 5662.819 kb on - strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.877 kb on + strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.878 kb on - strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.927 kb on + strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5662.928 kb on - strand, within Pf6N2E2_4905at 5663.151 kb on + strand, within Pf6N2E2_4905at 5663.151 kb on + strand, within Pf6N2E2_4905at 5663.152 kb on - strand, within Pf6N2E2_4905at 5663.152 kb on - strand, within Pf6N2E2_4905at 5663.358 kb on + strandat 5663.359 kb on - strandat 5663.359 kb on - strandat 5663.359 kb on - strandat 5663.359 kb on - strandat 5663.614 kb on + strand, within Pf6N2E2_4906at 5663.614 kb on + strand, within Pf6N2E2_4906at 5663.614 kb on + strand, within Pf6N2E2_4906at 5663.615 kb on - strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.653 kb on + strand, within Pf6N2E2_4906at 5663.654 kb on - strand, within Pf6N2E2_4906at 5663.654 kb on - strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.659 kb on + strand, within Pf6N2E2_4906at 5663.660 kb on - strand, within Pf6N2E2_4906at 5663.660 kb on - strand, within Pf6N2E2_4906at 5663.690 kb on + strandat 5663.690 kb on + strandat 5663.690 kb on + strandat 5663.690 kb on + strandat 5663.691 kb on - strandat 5663.691 kb on - strandat 5663.691 kb on - strandat 5663.691 kb on - strandat 5663.740 kb on + strandat 5663.741 kb on - strandat 5663.741 kb on - strandat 5663.806 kb on + strandat 5663.806 kb on + strandat 5663.807 kb on - strandat 5663.826 kb on + strandat 5663.827 kb on - strandat 5663.827 kb on - strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.841 kb on + strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.842 kb on - strandat 5663.846 kb on + strandat 5663.847 kb on - strandat 5664.007 kb on + strand, within Pf6N2E2_4907at 5664.007 kb on + strand, within Pf6N2E2_4907at 5664.007 kb on + strand, within Pf6N2E2_4907at 5664.008 kb on - strand, within Pf6N2E2_4907at 5664.008 kb on - strand, within Pf6N2E2_4907at 5664.010 kb on + strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.011 kb on - strand, within Pf6N2E2_4907at 5664.134 kb on - strand, within Pf6N2E2_4907at 5664.166 kb on + strand, within Pf6N2E2_4907at 5664.166 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.457 kb on + strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.458 kb on - strand, within Pf6N2E2_4907at 5664.463 kb on + strand, within Pf6N2E2_4907at 5664.463 kb on + strand, within Pf6N2E2_4907at 5664.464 kb on - strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.483 kb on + strand, within Pf6N2E2_4907at 5664.484 kb on - strand, within Pf6N2E2_4907

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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5,658,825 + Pf6N2E2_4904 0.84 -0.2
5,658,825 + Pf6N2E2_4904 0.84 +0.6
5,658,825 + Pf6N2E2_4904 0.84 +0.1
5,658,825 + Pf6N2E2_4904 0.84 -0.6
5,658,825 + Pf6N2E2_4904 0.84 +1.1
5,658,826 - Pf6N2E2_4904 0.84 +0.1
5,658,826 - Pf6N2E2_4904 0.84 +2.2
5,658,826 - Pf6N2E2_4904 0.84 -0.5
5,658,826 - Pf6N2E2_4904 0.84 +0.1
5,658,826 - Pf6N2E2_4904 0.84 -0.2
5,658,826 - +2.3
5,659,002 + -0.0
5,659,002 + +0.3
5,659,003 - +0.2
5,659,003 - -0.1
5,659,003 - -1.3
5,659,080 + +0.5
5,659,148 + -0.3
5,659,148 + +0.1
5,659,148 + +0.3
5,659,149 - +0.8
5,659,235 + +0.6
5,659,235 + +0.6
5,659,235 + +0.0
5,659,235 + +0.6
5,659,235 + +0.6
5,659,236 - -1.5
5,659,236 - +0.5
5,659,236 - -0.0
5,659,251 + +0.5
5,659,251 + +0.6
5,659,297 + -0.2
5,659,297 + +0.1
5,659,297 + -2.2
5,659,297 + +0.1
5,659,298 - -0.1
5,659,298 - -0.3
5,659,298 - +0.2
5,659,298 - -1.2
5,659,298 - +0.9
5,659,298 - -0.3
5,659,298 - +0.1
5,659,321 + +0.7
5,659,321 + +0.1
5,659,322 - -1.7
5,659,322 - -0.9
5,659,413 + -0.5
5,659,413 + -0.1
5,659,413 + +0.1
5,659,414 - -0.2
5,659,414 - -0.5
5,659,533 - -0.7
5,659,714 - -0.2
5,660,250 + Pf6N2E2_4905 0.22 +0.0
5,660,250 + Pf6N2E2_4905 0.22 +0.5
5,660,251 - Pf6N2E2_4905 0.22 -0.3
5,660,251 - Pf6N2E2_4905 0.22 +0.2
5,660,251 - Pf6N2E2_4905 0.22 -0.0
5,660,251 - Pf6N2E2_4905 0.22 -0.7
5,660,454 + Pf6N2E2_4905 0.27 +0.1
5,660,455 - Pf6N2E2_4905 0.27 +0.2
5,660,535 + Pf6N2E2_4905 0.29 +0.6
5,660,535 + Pf6N2E2_4905 0.29 -0.2
5,660,535 + Pf6N2E2_4905 0.29 -0.7
5,660,535 + Pf6N2E2_4905 0.29 -0.9
5,660,535 + Pf6N2E2_4905 0.29 +0.5
5,660,536 - Pf6N2E2_4905 0.29 -0.2
5,660,536 - Pf6N2E2_4905 0.29 -0.4
5,660,536 - Pf6N2E2_4905 0.29 -0.1
5,660,536 - Pf6N2E2_4905 0.29 +0.2
5,660,536 - Pf6N2E2_4905 0.29 +0.4
5,660,536 - Pf6N2E2_4905 0.29 +0.1
5,660,536 - Pf6N2E2_4905 0.29 +0.6
5,661,078 + Pf6N2E2_4905 0.41 +0.6
5,661,078 + Pf6N2E2_4905 0.41 -0.3
5,661,079 - Pf6N2E2_4905 0.42 +0.4
5,661,997 + Pf6N2E2_4905 0.63 -0.2
5,661,997 + Pf6N2E2_4905 0.63 +0.4
5,661,997 + Pf6N2E2_4905 0.63 +0.2
5,661,997 + Pf6N2E2_4905 0.63 -0.9
5,661,997 + Pf6N2E2_4905 0.63 -0.1
5,661,998 - Pf6N2E2_4905 0.63 +1.5
5,661,998 - Pf6N2E2_4905 0.63 +0.0
5,662,095 + Pf6N2E2_4905 0.65 -0.5
5,662,096 - Pf6N2E2_4905 0.65 -0.9
5,662,096 - Pf6N2E2_4905 0.65 -0.1
5,662,195 - Pf6N2E2_4905 0.68 +0.1
5,662,258 - Pf6N2E2_4905 0.69 -0.1
5,662,526 + Pf6N2E2_4905 0.75 +0.3
5,662,622 + Pf6N2E2_4905 0.78 -0.6
5,662,622 + Pf6N2E2_4905 0.78 -0.3
5,662,623 - Pf6N2E2_4905 0.78 -0.1
5,662,819 - Pf6N2E2_4905 0.82 +0.3
5,662,819 - Pf6N2E2_4905 0.82 +0.7
5,662,877 + Pf6N2E2_4905 0.83 +0.9
5,662,877 + Pf6N2E2_4905 0.83 -0.1
5,662,877 + Pf6N2E2_4905 0.83 +0.7
5,662,877 + Pf6N2E2_4905 0.83 -0.3
5,662,877 + Pf6N2E2_4905 0.83 -0.2
5,662,878 - Pf6N2E2_4905 0.83 +0.0
5,662,878 - Pf6N2E2_4905 0.83 +0.1
5,662,878 - Pf6N2E2_4905 0.83 -0.5
5,662,878 - Pf6N2E2_4905 0.83 -1.0
5,662,878 - Pf6N2E2_4905 0.83 -0.8
5,662,927 + Pf6N2E2_4905 0.85 +0.4
5,662,927 + Pf6N2E2_4905 0.85 -0.7
5,662,927 + Pf6N2E2_4905 0.85 +0.7
5,662,927 + Pf6N2E2_4905 0.85 +1.0
5,662,927 + Pf6N2E2_4905 0.85 +0.4
5,662,927 + Pf6N2E2_4905 0.85 -0.4
5,662,927 + Pf6N2E2_4905 0.85 +0.2
5,662,927 + Pf6N2E2_4905 0.85 +0.1
5,662,927 + Pf6N2E2_4905 0.85 +0.1
5,662,927 + Pf6N2E2_4905 0.85 -0.2
5,662,928 - Pf6N2E2_4905 0.85 -0.5
5,662,928 - Pf6N2E2_4905 0.85 +0.0
5,662,928 - Pf6N2E2_4905 0.85 -0.6
5,662,928 - Pf6N2E2_4905 0.85 +1.5
5,662,928 - Pf6N2E2_4905 0.85 -0.0
5,662,928 - Pf6N2E2_4905 0.85 +0.8
5,662,928 - Pf6N2E2_4905 0.85 +0.1
5,663,151 + Pf6N2E2_4905 0.90 +0.0
5,663,151 + Pf6N2E2_4905 0.90 -0.2
5,663,152 - Pf6N2E2_4905 0.90 +0.1
5,663,152 - Pf6N2E2_4905 0.90 +0.0
5,663,358 + -0.3
5,663,359 - +0.7
5,663,359 - +0.3
5,663,359 - +0.1
5,663,359 - -0.4
5,663,614 + Pf6N2E2_4906 0.36 -0.9
5,663,614 + Pf6N2E2_4906 0.36 -0.3
5,663,614 + Pf6N2E2_4906 0.36 +0.1
5,663,615 - Pf6N2E2_4906 0.37 -0.1
5,663,653 + Pf6N2E2_4906 0.67 -0.1
5,663,653 + Pf6N2E2_4906 0.67 +2.3
5,663,653 + Pf6N2E2_4906 0.67 -0.8
5,663,653 + Pf6N2E2_4906 0.67 +0.4
5,663,653 + Pf6N2E2_4906 0.67 +0.1
5,663,653 + Pf6N2E2_4906 0.67 +0.3
5,663,653 + Pf6N2E2_4906 0.67 +0.3
5,663,654 - Pf6N2E2_4906 0.68 -0.9
5,663,654 - Pf6N2E2_4906 0.68 +1.2
5,663,659 + Pf6N2E2_4906 0.72 +0.1
5,663,659 + Pf6N2E2_4906 0.72 +0.2
5,663,659 + Pf6N2E2_4906 0.72 +0.4
5,663,659 + Pf6N2E2_4906 0.72 +0.2
5,663,659 + Pf6N2E2_4906 0.72 -0.1
5,663,659 + Pf6N2E2_4906 0.72 +0.9
5,663,660 - Pf6N2E2_4906 0.73 -0.7
5,663,660 - Pf6N2E2_4906 0.73 -0.1
5,663,690 + +0.5
5,663,690 + -0.5
5,663,690 + -0.3
5,663,690 + +0.4
5,663,691 - -1.1
5,663,691 - -0.4
5,663,691 - -0.8
5,663,691 - +0.5
5,663,740 + -1.4
5,663,741 - -2.2
5,663,741 - -1.3
5,663,806 + -0.4
5,663,806 + -0.2
5,663,807 - -1.4
5,663,826 + +1.4
5,663,827 - +0.3
5,663,827 - +0.6
5,663,841 + +0.1
5,663,841 + +0.4
5,663,841 + +0.1
5,663,841 + +2.8
5,663,841 + +0.5
5,663,841 + -0.4
5,663,841 + +0.3
5,663,842 - -0.9
5,663,842 - +0.5
5,663,842 - +0.0
5,663,842 - -1.7
5,663,842 - -2.4
5,663,842 - -1.9
5,663,846 + -2.1
5,663,847 - -1.3
5,664,007 + Pf6N2E2_4907 0.19 +0.1
5,664,007 + Pf6N2E2_4907 0.19 +0.4
5,664,007 + Pf6N2E2_4907 0.19 +0.4
5,664,008 - Pf6N2E2_4907 0.19 -1.1
5,664,008 - Pf6N2E2_4907 0.19 -1.8
5,664,010 + Pf6N2E2_4907 0.19 +0.5
5,664,011 - Pf6N2E2_4907 0.19 -1.2
5,664,011 - Pf6N2E2_4907 0.19 -0.7
5,664,011 - Pf6N2E2_4907 0.19 -1.2
5,664,011 - Pf6N2E2_4907 0.19 -0.5
5,664,011 - Pf6N2E2_4907 0.19 -0.3
5,664,134 - Pf6N2E2_4907 0.34 -1.3
5,664,166 + Pf6N2E2_4907 0.37 -1.0
5,664,166 + Pf6N2E2_4907 0.37 -0.3
5,664,457 + Pf6N2E2_4907 0.71 -0.6
5,664,457 + Pf6N2E2_4907 0.71 +0.3
5,664,457 + Pf6N2E2_4907 0.71 +0.2
5,664,457 + Pf6N2E2_4907 0.71 -0.5
5,664,457 + Pf6N2E2_4907 0.71 -0.7
5,664,457 + Pf6N2E2_4907 0.71 +0.1
5,664,457 + Pf6N2E2_4907 0.71 -1.4
5,664,457 + Pf6N2E2_4907 0.71 -0.2
5,664,457 + Pf6N2E2_4907 0.71 +0.7
5,664,457 + Pf6N2E2_4907 0.71 +1.3
5,664,458 - Pf6N2E2_4907 0.71 +0.8
5,664,458 - Pf6N2E2_4907 0.71 -0.1
5,664,458 - Pf6N2E2_4907 0.71 +0.0
5,664,458 - Pf6N2E2_4907 0.71 -1.0
5,664,458 - Pf6N2E2_4907 0.71 -1.7
5,664,463 + Pf6N2E2_4907 0.71 +0.3
5,664,463 + Pf6N2E2_4907 0.71 +0.3
5,664,464 - Pf6N2E2_4907 0.71 +0.4
5,664,483 + Pf6N2E2_4907 0.74 +0.2
5,664,483 + Pf6N2E2_4907 0.74 -1.3
5,664,483 + Pf6N2E2_4907 0.74 -0.1
5,664,483 + Pf6N2E2_4907 0.74 +1.0
5,664,484 - Pf6N2E2_4907 0.74 -0.9

Or see this region's nucleotide sequence