Experiment: Cerium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4341 and Pf6N2E2_4342 overlap by 4 nucleotides Pf6N2E2_4342 and Pf6N2E2_4343 are separated by 0 nucleotides Pf6N2E2_4343 and Pf6N2E2_4344 overlap by 4 nucleotides
Pf6N2E2_4341 - IcmF-related protein, at 5,064,457 to 5,067,957
_4341
Pf6N2E2_4342 - Protein phosphatase ImpM, at 5,067,954 to 5,068,607
_4342
Pf6N2E2_4343 - Phosphoprotein phosphatase PppA, at 5,068,608 to 5,069,339
_4343
Pf6N2E2_4344 - Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 5,069,336 to 5,072,434
_4344
Position (kb)
5067
5068
5069 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5067.070 kb on + strand, within Pf6N2E2_4341 at 5067.070 kb on + strand, within Pf6N2E2_4341 at 5067.070 kb on + strand, within Pf6N2E2_4341 at 5067.070 kb on + strand, within Pf6N2E2_4341 at 5067.071 kb on - strand, within Pf6N2E2_4341 at 5067.071 kb on - strand, within Pf6N2E2_4341 at 5067.071 kb on - strand, within Pf6N2E2_4341 at 5067.071 kb on - strand, within Pf6N2E2_4341 at 5067.071 kb on - strand, within Pf6N2E2_4341 at 5067.295 kb on + strand, within Pf6N2E2_4341 at 5067.296 kb on - strand, within Pf6N2E2_4341 at 5067.403 kb on + strand, within Pf6N2E2_4341 at 5067.403 kb on + strand, within Pf6N2E2_4341 at 5067.404 kb on - strand, within Pf6N2E2_4341 at 5067.404 kb on - strand, within Pf6N2E2_4341 at 5067.404 kb on - strand, within Pf6N2E2_4341 at 5067.404 kb on - strand, within Pf6N2E2_4341 at 5067.427 kb on + strand, within Pf6N2E2_4341 at 5067.427 kb on + strand, within Pf6N2E2_4341 at 5067.427 kb on + strand, within Pf6N2E2_4341 at 5067.428 kb on - strand, within Pf6N2E2_4341 at 5067.428 kb on - strand, within Pf6N2E2_4341 at 5067.428 kb on - strand, within Pf6N2E2_4341 at 5067.428 kb on - strand, within Pf6N2E2_4341 at 5067.652 kb on + strand at 5067.878 kb on - strand at 5067.878 kb on - strand at 5067.954 kb on - strand at 5067.959 kb on + strand at 5067.959 kb on + strand at 5067.959 kb on + strand at 5067.960 kb on - strand at 5067.960 kb on - strand at 5067.960 kb on - strand at 5068.107 kb on + strand, within Pf6N2E2_4342 at 5068.107 kb on + strand, within Pf6N2E2_4342 at 5068.107 kb on + strand, within Pf6N2E2_4342 at 5068.108 kb on - strand, within Pf6N2E2_4342 at 5068.108 kb on - strand, within Pf6N2E2_4342 at 5068.108 kb on - strand, within Pf6N2E2_4342 at 5068.191 kb on - strand, within Pf6N2E2_4342 at 5068.605 kb on + strand at 5068.605 kb on + strand at 5068.605 kb on + strand at 5068.606 kb on - strand at 5068.606 kb on - strand at 5068.606 kb on - strand at 5068.606 kb on - strand at 5068.606 kb on - strand at 5068.714 kb on + strand, within Pf6N2E2_4343 at 5068.758 kb on + strand, within Pf6N2E2_4343 at 5068.758 kb on + strand, within Pf6N2E2_4343 at 5068.758 kb on + strand, within Pf6N2E2_4343 at 5068.759 kb on - strand, within Pf6N2E2_4343 at 5068.759 kb on - strand, within Pf6N2E2_4343 at 5068.821 kb on + strand, within Pf6N2E2_4343 at 5068.822 kb on - strand, within Pf6N2E2_4343 at 5068.822 kb on - strand, within Pf6N2E2_4343 at 5068.822 kb on - strand, within Pf6N2E2_4343 at 5068.977 kb on + strand, within Pf6N2E2_4343 at 5069.026 kb on - strand, within Pf6N2E2_4343 at 5069.172 kb on + strand, within Pf6N2E2_4343 at 5069.172 kb on + strand, within Pf6N2E2_4343 at 5069.172 kb on + strand, within Pf6N2E2_4343 at 5069.172 kb on + strand, within Pf6N2E2_4343 at 5069.173 kb on - strand, within Pf6N2E2_4343 at 5069.173 kb on - strand, within Pf6N2E2_4343 at 5069.173 kb on - strand, within Pf6N2E2_4343 at 5069.199 kb on - strand, within Pf6N2E2_4343 at 5069.199 kb on - strand, within Pf6N2E2_4343 at 5069.414 kb on + strand at 5069.414 kb on + strand at 5069.414 kb on + strand at 5069.588 kb on + strand at 5069.589 kb on - strand at 5069.589 kb on - strand at 5069.589 kb on - strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.591 kb on + strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.592 kb on - strand at 5069.606 kb on + strand at 5069.607 kb on - strand at 5069.607 kb on - strand at 5069.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M remove 5,067,070 + Pf6N2E2_4341 0.75 -0.0 5,067,070 + Pf6N2E2_4341 0.75 +0.3 5,067,070 + Pf6N2E2_4341 0.75 +0.6 5,067,070 + Pf6N2E2_4341 0.75 +0.2 5,067,071 - Pf6N2E2_4341 0.75 -0.7 5,067,071 - Pf6N2E2_4341 0.75 -0.5 5,067,071 - Pf6N2E2_4341 0.75 +0.4 5,067,071 - Pf6N2E2_4341 0.75 +0.2 5,067,071 - Pf6N2E2_4341 0.75 +0.5 5,067,295 + Pf6N2E2_4341 0.81 -0.5 5,067,296 - Pf6N2E2_4341 0.81 +0.4 5,067,403 + Pf6N2E2_4341 0.84 +0.2 5,067,403 + Pf6N2E2_4341 0.84 +0.4 5,067,404 - Pf6N2E2_4341 0.84 -0.5 5,067,404 - Pf6N2E2_4341 0.84 -0.6 5,067,404 - Pf6N2E2_4341 0.84 -0.5 5,067,404 - Pf6N2E2_4341 0.84 -0.4 5,067,427 + Pf6N2E2_4341 0.85 +1.6 5,067,427 + Pf6N2E2_4341 0.85 +0.8 5,067,427 + Pf6N2E2_4341 0.85 -0.2 5,067,428 - Pf6N2E2_4341 0.85 +1.7 5,067,428 - Pf6N2E2_4341 0.85 +0.1 5,067,428 - Pf6N2E2_4341 0.85 -0.7 5,067,428 - Pf6N2E2_4341 0.85 -0.2 5,067,652 + -0.3 5,067,878 - -0.7 5,067,878 - +0.5 5,067,954 - -0.1 5,067,959 + +0.1 5,067,959 + -0.8 5,067,959 + +0.1 5,067,960 - +0.1 5,067,960 - -0.6 5,067,960 - +0.3 5,068,107 + Pf6N2E2_4342 0.23 -0.9 5,068,107 + Pf6N2E2_4342 0.23 -0.1 5,068,107 + Pf6N2E2_4342 0.23 +0.8 5,068,108 - Pf6N2E2_4342 0.24 -0.5 5,068,108 - Pf6N2E2_4342 0.24 -0.1 5,068,108 - Pf6N2E2_4342 0.24 -0.7 5,068,191 - Pf6N2E2_4342 0.36 -1.8 5,068,605 + +1.3 5,068,605 + -0.4 5,068,605 + +0.0 5,068,606 - -0.2 5,068,606 - -0.3 5,068,606 - +0.1 5,068,606 - +0.2 5,068,606 - -0.1 5,068,714 + Pf6N2E2_4343 0.14 -1.1 5,068,758 + Pf6N2E2_4343 0.20 -1.2 5,068,758 + Pf6N2E2_4343 0.20 +0.2 5,068,758 + Pf6N2E2_4343 0.20 -1.3 5,068,759 - Pf6N2E2_4343 0.21 +1.3 5,068,759 - Pf6N2E2_4343 0.21 -0.7 5,068,821 + Pf6N2E2_4343 0.29 -1.0 5,068,822 - Pf6N2E2_4343 0.29 +0.7 5,068,822 - Pf6N2E2_4343 0.29 +0.3 5,068,822 - Pf6N2E2_4343 0.29 +2.0 5,068,977 + Pf6N2E2_4343 0.50 +1.0 5,069,026 - Pf6N2E2_4343 0.57 +0.3 5,069,172 + Pf6N2E2_4343 0.77 -0.4 5,069,172 + Pf6N2E2_4343 0.77 -0.4 5,069,172 + Pf6N2E2_4343 0.77 +0.9 5,069,172 + Pf6N2E2_4343 0.77 +0.3 5,069,173 - Pf6N2E2_4343 0.77 -0.6 5,069,173 - Pf6N2E2_4343 0.77 +0.6 5,069,173 - Pf6N2E2_4343 0.77 +0.3 5,069,199 - Pf6N2E2_4343 0.81 -0.1 5,069,199 - Pf6N2E2_4343 0.81 -0.2 5,069,414 + +0.4 5,069,414 + -0.5 5,069,414 + -0.1 5,069,588 + -0.4 5,069,589 - +0.8 5,069,589 - +0.4 5,069,589 - -0.8 5,069,591 + +0.7 5,069,591 + -0.9 5,069,591 + -0.2 5,069,591 + +0.4 5,069,591 + +1.0 5,069,591 + -0.5 5,069,591 + -0.6 5,069,591 + +0.1 5,069,591 + +0.3 5,069,591 + -0.5 5,069,592 - -0.2 5,069,592 - +0.3 5,069,592 - -0.4 5,069,592 - -0.5 5,069,592 - -0.5 5,069,592 - -0.3 5,069,592 - -0.5 5,069,592 - +0.2 5,069,592 - +0.3 5,069,592 - +0.3 5,069,592 - +0.3 5,069,606 + -0.9 5,069,607 - +0.1 5,069,607 - +0.3 5,069,607 - -1.0
Or see this region's nucleotide sequence