Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2752

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2750 and Pf6N2E2_2751 are separated by 29 nucleotidesPf6N2E2_2751 and Pf6N2E2_2752 are separated by 98 nucleotidesPf6N2E2_2752 and Pf6N2E2_2753 are separated by 63 nucleotides Pf6N2E2_2750 - Putative permease PerM (= YfgO), at 3,242,055 to 3,243,125 _2750 Pf6N2E2_2751 - Rhodanese-like domain protein, at 3,243,155 to 3,243,394 _2751 Pf6N2E2_2752 - Exported zinc metalloprotease YfgC precursor, at 3,243,493 to 3,244,926 _2752 Pf6N2E2_2753 - HtrA protease/chaperone protein, at 3,244,990 to 3,246,420 _2753 Position (kb) 3243 3244 3245Strain fitness (log2 ratio) -2 -1 0 1at 3242.632 kb on + strand, within Pf6N2E2_2750at 3242.633 kb on - strand, within Pf6N2E2_2750at 3242.633 kb on - strand, within Pf6N2E2_2750at 3242.633 kb on - strand, within Pf6N2E2_2750at 3242.872 kb on - strand, within Pf6N2E2_2750at 3242.977 kb on + strand, within Pf6N2E2_2750at 3243.092 kb on - strandat 3243.092 kb on - strandat 3243.380 kb on + strandat 3243.380 kb on + strandat 3243.427 kb on + strandat 3243.428 kb on - strandat 3243.432 kb on + strandat 3243.432 kb on + strandat 3243.432 kb on + strandat 3243.432 kb on + strandat 3243.433 kb on - strandat 3243.433 kb on - strandat 3243.433 kb on - strandat 3243.459 kb on + strandat 3243.464 kb on + strandat 3243.464 kb on + strandat 3243.464 kb on + strandat 3243.464 kb on + strandat 3243.465 kb on - strandat 3243.481 kb on - strandat 3243.688 kb on + strand, within Pf6N2E2_2752at 3243.688 kb on + strand, within Pf6N2E2_2752at 3243.689 kb on - strand, within Pf6N2E2_2752at 3243.706 kb on + strand, within Pf6N2E2_2752at 3243.706 kb on + strand, within Pf6N2E2_2752at 3243.707 kb on - strand, within Pf6N2E2_2752at 3243.853 kb on + strand, within Pf6N2E2_2752at 3243.854 kb on - strand, within Pf6N2E2_2752at 3244.117 kb on + strand, within Pf6N2E2_2752at 3244.321 kb on + strand, within Pf6N2E2_2752at 3244.321 kb on + strand, within Pf6N2E2_2752at 3244.321 kb on + strand, within Pf6N2E2_2752at 3244.322 kb on - strand, within Pf6N2E2_2752at 3244.322 kb on - strand, within Pf6N2E2_2752at 3244.399 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.579 kb on + strand, within Pf6N2E2_2752at 3244.592 kb on - strand, within Pf6N2E2_2752at 3244.705 kb on + strand, within Pf6N2E2_2752at 3244.705 kb on + strand, within Pf6N2E2_2752at 3244.705 kb on + strand, within Pf6N2E2_2752at 3244.771 kb on + strand, within Pf6N2E2_2752at 3244.943 kb on - strandat 3244.943 kb on - strandat 3245.130 kb on + strandat 3245.131 kb on - strandat 3245.131 kb on - strandat 3245.410 kb on + strand, within Pf6N2E2_2753at 3245.410 kb on + strand, within Pf6N2E2_2753at 3245.410 kb on + strand, within Pf6N2E2_2753at 3245.709 kb on - strand, within Pf6N2E2_2753at 3245.811 kb on - strand, within Pf6N2E2_2753

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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3,242,632 + Pf6N2E2_2750 0.54 -1.6
3,242,633 - Pf6N2E2_2750 0.54 +1.1
3,242,633 - Pf6N2E2_2750 0.54 -0.6
3,242,633 - Pf6N2E2_2750 0.54 +0.4
3,242,872 - Pf6N2E2_2750 0.76 -0.5
3,242,977 + Pf6N2E2_2750 0.86 -0.6
3,243,092 - +0.6
3,243,092 - -0.0
3,243,380 + +1.7
3,243,380 + -0.6
3,243,427 + -0.2
3,243,428 - -0.2
3,243,432 + +0.1
3,243,432 + -0.3
3,243,432 + -0.5
3,243,432 + +0.7
3,243,433 - -0.7
3,243,433 - -0.8
3,243,433 - +0.3
3,243,459 + +0.2
3,243,464 + +0.5
3,243,464 + +0.5
3,243,464 + -0.3
3,243,464 + -0.5
3,243,465 - -0.3
3,243,481 - -1.0
3,243,688 + Pf6N2E2_2752 0.14 -2.4
3,243,688 + Pf6N2E2_2752 0.14 -1.7
3,243,689 - Pf6N2E2_2752 0.14 -0.6
3,243,706 + Pf6N2E2_2752 0.15 -0.4
3,243,706 + Pf6N2E2_2752 0.15 -0.0
3,243,707 - Pf6N2E2_2752 0.15 +0.3
3,243,853 + Pf6N2E2_2752 0.25 -0.6
3,243,854 - Pf6N2E2_2752 0.25 -0.5
3,244,117 + Pf6N2E2_2752 0.44 -0.4
3,244,321 + Pf6N2E2_2752 0.58 -0.8
3,244,321 + Pf6N2E2_2752 0.58 -0.2
3,244,321 + Pf6N2E2_2752 0.58 +0.2
3,244,322 - Pf6N2E2_2752 0.58 -0.1
3,244,322 - Pf6N2E2_2752 0.58 +0.2
3,244,399 + Pf6N2E2_2752 0.63 -0.7
3,244,495 + Pf6N2E2_2752 0.70 -0.4
3,244,495 + Pf6N2E2_2752 0.70 -0.5
3,244,495 + Pf6N2E2_2752 0.70 +0.4
3,244,495 + Pf6N2E2_2752 0.70 +0.1
3,244,495 + Pf6N2E2_2752 0.70 +0.0
3,244,495 + Pf6N2E2_2752 0.70 -1.8
3,244,495 + Pf6N2E2_2752 0.70 -0.6
3,244,496 - Pf6N2E2_2752 0.70 -1.8
3,244,496 - Pf6N2E2_2752 0.70 -1.1
3,244,496 - Pf6N2E2_2752 0.70 -2.3
3,244,496 - Pf6N2E2_2752 0.70 +0.4
3,244,496 - Pf6N2E2_2752 0.70 -0.4
3,244,496 - Pf6N2E2_2752 0.70 -0.8
3,244,496 - Pf6N2E2_2752 0.70 -1.7
3,244,496 - Pf6N2E2_2752 0.70 -1.6
3,244,496 - Pf6N2E2_2752 0.70 +0.6
3,244,496 - Pf6N2E2_2752 0.70 -0.4
3,244,496 - Pf6N2E2_2752 0.70 -0.4
3,244,579 + Pf6N2E2_2752 0.76 -1.9
3,244,592 - Pf6N2E2_2752 0.77 +0.3
3,244,705 + Pf6N2E2_2752 0.85 +1.3
3,244,705 + Pf6N2E2_2752 0.85 +0.2
3,244,705 + Pf6N2E2_2752 0.85 +0.3
3,244,771 + Pf6N2E2_2752 0.89 +0.7
3,244,943 - -0.6
3,244,943 - +0.3
3,245,130 + -0.2
3,245,131 - +0.5
3,245,131 - +0.7
3,245,410 + Pf6N2E2_2753 0.29 +0.9
3,245,410 + Pf6N2E2_2753 0.29 -0.1
3,245,410 + Pf6N2E2_2753 0.29 -0.4
3,245,709 - Pf6N2E2_2753 0.50 +1.3
3,245,811 - Pf6N2E2_2753 0.57 -0.4

Or see this region's nucleotide sequence