Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1826

Experiment: Cerium(III) chloride 0.000195313 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1825 and Pf6N2E2_1826 are separated by 316 nucleotides Pf6N2E2_1825 - FOG: EAL domain protein, at 2,159,930 to 2,160,706 _1825 Pf6N2E2_1826 - possible FusE-MFP/HlyD family membrane fusion protein, at 2,161,023 to 2,161,544 _1826 Position (kb) 2161 2162Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2160.197 kb on - strand, within Pf6N2E2_1825at 2160.291 kb on - strand, within Pf6N2E2_1825at 2160.579 kb on + strand, within Pf6N2E2_1825at 2160.713 kb on + strandat 2160.732 kb on + strandat 2160.732 kb on + strandat 2160.759 kb on - strandat 2160.843 kb on + strandat 2160.843 kb on + strandat 2160.843 kb on + strandat 2160.843 kb on + strandat 2160.843 kb on + strandat 2160.844 kb on - strandat 2160.844 kb on - strandat 2160.845 kb on + strandat 2160.896 kb on + strandat 2160.896 kb on + strandat 2160.896 kb on + strandat 2160.896 kb on + strandat 2160.896 kb on + strandat 2160.897 kb on - strandat 2160.897 kb on - strandat 2160.897 kb on - strandat 2160.897 kb on - strandat 2160.897 kb on - strandat 2160.898 kb on + strandat 2160.898 kb on + strandat 2160.898 kb on + strandat 2160.898 kb on + strandat 2160.898 kb on + strandat 2160.898 kb on + strandat 2160.898 kb on + strandat 2160.899 kb on - strandat 2160.899 kb on - strandat 2160.899 kb on - strandat 2160.899 kb on - strandat 2160.968 kb on + strandat 2160.968 kb on + strandat 2160.968 kb on + strandat 2160.968 kb on + strandat 2160.968 kb on + strandat 2160.969 kb on - strandat 2160.969 kb on - strandat 2160.975 kb on - strandat 2160.975 kb on - strandat 2160.975 kb on - strandat 2161.103 kb on + strand, within Pf6N2E2_1826at 2161.103 kb on + strand, within Pf6N2E2_1826at 2161.184 kb on + strand, within Pf6N2E2_1826at 2161.184 kb on + strand, within Pf6N2E2_1826at 2161.185 kb on - strand, within Pf6N2E2_1826at 2161.185 kb on - strand, within Pf6N2E2_1826at 2161.354 kb on + strand, within Pf6N2E2_1826at 2161.354 kb on + strand, within Pf6N2E2_1826at 2161.355 kb on - strand, within Pf6N2E2_1826at 2161.417 kb on + strand, within Pf6N2E2_1826at 2161.450 kb on + strand, within Pf6N2E2_1826at 2161.450 kb on + strand, within Pf6N2E2_1826at 2161.450 kb on + strand, within Pf6N2E2_1826at 2161.451 kb on - strand, within Pf6N2E2_1826at 2161.451 kb on - strand, within Pf6N2E2_1826at 2161.451 kb on - strand, within Pf6N2E2_1826at 2161.528 kb on + strandat 2161.529 kb on - strandat 2161.529 kb on - strandat 2161.529 kb on - strandat 2161.638 kb on - strandat 2161.672 kb on - strandat 2161.672 kb on - strandat 2161.672 kb on - strandat 2161.777 kb on + strandat 2161.777 kb on + strandat 2161.803 kb on - strandat 2161.812 kb on - strandat 2161.877 kb on - strandat 2161.933 kb on - strandat 2162.112 kb on + strandat 2162.113 kb on - strandat 2162.247 kb on + strandat 2162.374 kb on + strandat 2162.375 kb on - strandat 2162.428 kb on + strandat 2162.429 kb on - strandat 2162.499 kb on + strandat 2162.499 kb on + strandat 2162.500 kb on - strandat 2162.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M
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2,160,197 - Pf6N2E2_1825 0.34 +1.1
2,160,291 - Pf6N2E2_1825 0.46 +1.3
2,160,579 + Pf6N2E2_1825 0.84 +0.2
2,160,713 + +0.1
2,160,732 + -0.4
2,160,732 + -0.2
2,160,759 - +0.3
2,160,843 + -0.5
2,160,843 + -1.0
2,160,843 + +0.1
2,160,843 + +0.2
2,160,843 + -0.3
2,160,844 - -0.1
2,160,844 - +0.3
2,160,845 + +0.6
2,160,896 + +0.3
2,160,896 + +1.6
2,160,896 + +1.2
2,160,896 + +0.4
2,160,896 + -1.9
2,160,897 - +1.7
2,160,897 - -0.7
2,160,897 - +0.5
2,160,897 - +0.5
2,160,897 - -1.8
2,160,898 + +0.4
2,160,898 + +1.2
2,160,898 + -0.6
2,160,898 + -1.0
2,160,898 + +1.7
2,160,898 + -0.5
2,160,898 + -0.6
2,160,899 - +0.4
2,160,899 - -0.2
2,160,899 - -0.3
2,160,899 - -0.4
2,160,968 + +0.3
2,160,968 + +0.2
2,160,968 + +1.4
2,160,968 + -0.0
2,160,968 + +0.0
2,160,969 - +0.4
2,160,969 - -0.3
2,160,975 - -1.0
2,160,975 - +0.2
2,160,975 - -0.5
2,161,103 + Pf6N2E2_1826 0.15 -1.0
2,161,103 + Pf6N2E2_1826 0.15 +0.4
2,161,184 + Pf6N2E2_1826 0.31 +0.6
2,161,184 + Pf6N2E2_1826 0.31 +0.3
2,161,185 - Pf6N2E2_1826 0.31 -0.7
2,161,185 - Pf6N2E2_1826 0.31 -0.6
2,161,354 + Pf6N2E2_1826 0.63 +0.4
2,161,354 + Pf6N2E2_1826 0.63 +0.9
2,161,355 - Pf6N2E2_1826 0.64 -1.3
2,161,417 + Pf6N2E2_1826 0.75 -0.1
2,161,450 + Pf6N2E2_1826 0.82 -0.7
2,161,450 + Pf6N2E2_1826 0.82 -0.6
2,161,450 + Pf6N2E2_1826 0.82 -0.1
2,161,451 - Pf6N2E2_1826 0.82 +0.2
2,161,451 - Pf6N2E2_1826 0.82 +0.2
2,161,451 - Pf6N2E2_1826 0.82 +0.4
2,161,528 + +0.2
2,161,529 - -0.1
2,161,529 - +0.0
2,161,529 - +0.7
2,161,638 - +0.9
2,161,672 - -0.0
2,161,672 - -1.0
2,161,672 - +0.3
2,161,777 + +0.4
2,161,777 + +0.6
2,161,803 - +3.0
2,161,812 - +0.6
2,161,877 - +0.7
2,161,933 - -0.3
2,162,112 + +0.7
2,162,113 - -0.6
2,162,247 + -0.7
2,162,374 + -0.5
2,162,375 - -0.2
2,162,428 + +1.0
2,162,429 - +0.4
2,162,499 + +1.4
2,162,499 + +3.0
2,162,500 - -1.1
2,162,500 - -0.5

Or see this region's nucleotide sequence