Experiment: Cerium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1822 and Pf6N2E2_1823 are separated by 31 nucleotides Pf6N2E2_1823 and Pf6N2E2_1824 are separated by 392 nucleotides Pf6N2E2_1824 and Pf6N2E2_1825 are separated by 111 nucleotides
Pf6N2E2_1822 - sensor histidine kinase, at 2,154,302 to 2,158,021
_1822
Pf6N2E2_1823 - ABC transporter, substrate binding protein, at 2,158,053 to 2,159,225
_1823
Pf6N2E2_1824 - hypothetical protein, at 2,159,618 to 2,159,818
_1824
Pf6N2E2_1825 - FOG: EAL domain protein, at 2,159,930 to 2,160,706
_1825
Position (kb)
2158
2159
2160 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2157.129 kb on - strand, within Pf6N2E2_1822 at 2157.775 kb on + strand at 2157.776 kb on - strand at 2157.776 kb on - strand at 2157.915 kb on + strand at 2157.916 kb on - strand at 2158.142 kb on - strand at 2158.505 kb on + strand, within Pf6N2E2_1823 at 2158.505 kb on + strand, within Pf6N2E2_1823 at 2158.505 kb on + strand, within Pf6N2E2_1823 at 2158.505 kb on + strand, within Pf6N2E2_1823 at 2158.506 kb on - strand, within Pf6N2E2_1823 at 2158.535 kb on - strand, within Pf6N2E2_1823 at 2158.537 kb on - strand, within Pf6N2E2_1823 at 2158.537 kb on - strand, within Pf6N2E2_1823 at 2158.674 kb on - strand, within Pf6N2E2_1823 at 2158.674 kb on - strand, within Pf6N2E2_1823 at 2158.676 kb on - strand, within Pf6N2E2_1823 at 2158.676 kb on - strand, within Pf6N2E2_1823 at 2158.676 kb on - strand, within Pf6N2E2_1823 at 2158.676 kb on - strand, within Pf6N2E2_1823 at 2158.711 kb on + strand, within Pf6N2E2_1823 at 2158.711 kb on + strand, within Pf6N2E2_1823 at 2158.711 kb on + strand, within Pf6N2E2_1823 at 2158.711 kb on + strand, within Pf6N2E2_1823 at 2158.712 kb on - strand, within Pf6N2E2_1823 at 2158.723 kb on + strand, within Pf6N2E2_1823 at 2158.723 kb on + strand, within Pf6N2E2_1823 at 2158.723 kb on + strand, within Pf6N2E2_1823 at 2159.002 kb on + strand, within Pf6N2E2_1823 at 2159.024 kb on + strand, within Pf6N2E2_1823 at 2159.024 kb on + strand, within Pf6N2E2_1823 at 2159.025 kb on - strand, within Pf6N2E2_1823 at 2159.025 kb on - strand, within Pf6N2E2_1823 at 2159.026 kb on + strand, within Pf6N2E2_1823 at 2159.026 kb on + strand, within Pf6N2E2_1823 at 2159.026 kb on + strand, within Pf6N2E2_1823 at 2159.027 kb on - strand, within Pf6N2E2_1823 at 2159.027 kb on - strand, within Pf6N2E2_1823 at 2159.027 kb on - strand, within Pf6N2E2_1823 at 2159.195 kb on - strand at 2159.198 kb on - strand at 2159.198 kb on - strand at 2159.198 kb on - strand at 2159.226 kb on - strand at 2159.226 kb on - strand at 2159.226 kb on - strand at 2159.264 kb on + strand at 2159.265 kb on - strand at 2159.291 kb on - strand at 2159.291 kb on - strand at 2159.387 kb on - strand at 2159.481 kb on + strand at 2159.481 kb on + strand at 2159.482 kb on - strand at 2159.482 kb on - strand at 2159.482 kb on - strand at 2159.560 kb on - strand at 2159.664 kb on + strand, within Pf6N2E2_1824 at 2159.665 kb on - strand, within Pf6N2E2_1824 at 2159.773 kb on - strand, within Pf6N2E2_1824 at 2159.831 kb on + strand at 2159.982 kb on + strand at 2159.982 kb on + strand at 2159.982 kb on + strand at 2159.983 kb on - strand at 2159.983 kb on - strand at 2159.983 kb on - strand at 2159.983 kb on - strand at 2159.983 kb on - strand at 2159.983 kb on - strand at 2159.983 kb on - strand at 2159.983 kb on - strand at 2159.989 kb on - strand at 2159.989 kb on - strand at 2159.989 kb on - strand at 2159.989 kb on - strand at 2160.017 kb on + strand, within Pf6N2E2_1825 at 2160.018 kb on - strand, within Pf6N2E2_1825 at 2160.018 kb on - strand, within Pf6N2E2_1825 at 2160.018 kb on - strand, within Pf6N2E2_1825 at 2160.197 kb on - strand, within Pf6N2E2_1825
Per-strain Table
Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M remove 2,157,129 - Pf6N2E2_1822 0.76 +0.4 2,157,775 + +0.5 2,157,776 - +0.2 2,157,776 - -0.0 2,157,915 + -0.7 2,157,916 - -1.0 2,158,142 - +0.6 2,158,505 + Pf6N2E2_1823 0.39 -0.2 2,158,505 + Pf6N2E2_1823 0.39 +0.7 2,158,505 + Pf6N2E2_1823 0.39 +1.1 2,158,505 + Pf6N2E2_1823 0.39 +0.6 2,158,506 - Pf6N2E2_1823 0.39 -0.5 2,158,535 - Pf6N2E2_1823 0.41 +0.2 2,158,537 - Pf6N2E2_1823 0.41 +1.3 2,158,537 - Pf6N2E2_1823 0.41 +0.1 2,158,674 - Pf6N2E2_1823 0.53 -1.4 2,158,674 - Pf6N2E2_1823 0.53 +0.2 2,158,676 - Pf6N2E2_1823 0.53 -0.1 2,158,676 - Pf6N2E2_1823 0.53 +0.0 2,158,676 - Pf6N2E2_1823 0.53 -0.7 2,158,676 - Pf6N2E2_1823 0.53 +0.0 2,158,711 + Pf6N2E2_1823 0.56 -2.1 2,158,711 + Pf6N2E2_1823 0.56 -1.7 2,158,711 + Pf6N2E2_1823 0.56 -0.6 2,158,711 + Pf6N2E2_1823 0.56 -1.5 2,158,712 - Pf6N2E2_1823 0.56 +0.6 2,158,723 + Pf6N2E2_1823 0.57 -0.8 2,158,723 + Pf6N2E2_1823 0.57 +0.2 2,158,723 + Pf6N2E2_1823 0.57 +1.4 2,159,002 + Pf6N2E2_1823 0.81 -0.7 2,159,024 + Pf6N2E2_1823 0.83 -2.8 2,159,024 + Pf6N2E2_1823 0.83 +0.2 2,159,025 - Pf6N2E2_1823 0.83 +0.4 2,159,025 - Pf6N2E2_1823 0.83 +0.6 2,159,026 + Pf6N2E2_1823 0.83 +1.1 2,159,026 + Pf6N2E2_1823 0.83 -0.9 2,159,026 + Pf6N2E2_1823 0.83 +0.7 2,159,027 - Pf6N2E2_1823 0.83 +0.5 2,159,027 - Pf6N2E2_1823 0.83 +0.3 2,159,027 - Pf6N2E2_1823 0.83 -0.3 2,159,195 - -0.1 2,159,198 - +0.1 2,159,198 - +0.4 2,159,198 - -1.1 2,159,226 - +1.0 2,159,226 - +0.5 2,159,226 - -0.1 2,159,264 + +0.4 2,159,265 - -2.4 2,159,291 - -0.1 2,159,291 - +0.1 2,159,387 - -1.8 2,159,481 + +1.5 2,159,481 + +0.4 2,159,482 - +0.1 2,159,482 - +0.2 2,159,482 - -0.2 2,159,560 - +0.2 2,159,664 + Pf6N2E2_1824 0.23 -0.7 2,159,665 - Pf6N2E2_1824 0.23 -0.9 2,159,773 - Pf6N2E2_1824 0.77 -0.2 2,159,831 + -0.2 2,159,982 + +1.4 2,159,982 + +2.0 2,159,982 + -0.1 2,159,983 - -0.7 2,159,983 - +0.6 2,159,983 - +0.0 2,159,983 - -0.3 2,159,983 - +0.5 2,159,983 - -0.4 2,159,983 - -0.9 2,159,983 - +0.3 2,159,989 - -0.8 2,159,989 - +0.2 2,159,989 - -1.2 2,159,989 - -0.3 2,160,017 + Pf6N2E2_1825 0.11 +1.0 2,160,018 - Pf6N2E2_1825 0.11 -0.3 2,160,018 - Pf6N2E2_1825 0.11 +1.4 2,160,018 - Pf6N2E2_1825 0.11 +0.5 2,160,197 - Pf6N2E2_1825 0.34 +1.1
Or see this region's nucleotide sequence