Experiment: Cerium(III) chloride 0.000195313 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1187 and Pf6N2E2_1188 are separated by 9 nucleotides Pf6N2E2_1188 and Pf6N2E2_1189 overlap by 10 nucleotides Pf6N2E2_1189 and Pf6N2E2_1190 are separated by 1 nucleotides
Pf6N2E2_1187 - Probable nikkomycin biosynthesis protein, carboxylase, at 1,389,990 to 1,391,273
_1187
Pf6N2E2_1188 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 1,391,283 to 1,392,140
_1188
Pf6N2E2_1189 - Thioredoxin reductase (EC 1.8.1.9), at 1,392,131 to 1,393,300
_1189
Pf6N2E2_1190 - Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase, at 1,393,302 to 1,394,303
_1190
Position (kb)
1392
1393
1394 Strain fitness (log2 ratio)
-1
0
1
2 at 1391.135 kb on + strand, within Pf6N2E2_1187 at 1391.135 kb on + strand, within Pf6N2E2_1187 at 1391.171 kb on - strand at 1391.234 kb on + strand at 1391.239 kb on + strand at 1391.239 kb on + strand at 1391.273 kb on + strand at 1391.273 kb on + strand at 1391.274 kb on - strand at 1391.276 kb on + strand at 1391.276 kb on + strand at 1391.276 kb on + strand at 1391.276 kb on + strand at 1391.277 kb on - strand at 1391.277 kb on - strand at 1391.360 kb on + strand at 1391.496 kb on + strand, within Pf6N2E2_1188 at 1391.524 kb on + strand, within Pf6N2E2_1188 at 1391.525 kb on - strand, within Pf6N2E2_1188 at 1391.525 kb on - strand, within Pf6N2E2_1188 at 1391.558 kb on - strand, within Pf6N2E2_1188 at 1391.803 kb on - strand, within Pf6N2E2_1188 at 1391.863 kb on + strand, within Pf6N2E2_1188 at 1392.004 kb on + strand, within Pf6N2E2_1188 at 1392.004 kb on + strand, within Pf6N2E2_1188 at 1392.005 kb on - strand, within Pf6N2E2_1188 at 1392.005 kb on - strand, within Pf6N2E2_1188 at 1392.043 kb on - strand, within Pf6N2E2_1188 at 1392.281 kb on - strand, within Pf6N2E2_1189 at 1392.281 kb on - strand, within Pf6N2E2_1189 at 1392.534 kb on + strand, within Pf6N2E2_1189 at 1392.535 kb on - strand, within Pf6N2E2_1189 at 1392.551 kb on - strand, within Pf6N2E2_1189 at 1392.551 kb on - strand, within Pf6N2E2_1189 at 1392.683 kb on + strand, within Pf6N2E2_1189 at 1392.684 kb on - strand, within Pf6N2E2_1189 at 1392.831 kb on + strand, within Pf6N2E2_1189 at 1393.047 kb on + strand, within Pf6N2E2_1189 at 1393.048 kb on - strand, within Pf6N2E2_1189 at 1393.056 kb on + strand, within Pf6N2E2_1189 at 1393.057 kb on - strand, within Pf6N2E2_1189 at 1393.110 kb on + strand, within Pf6N2E2_1189 at 1393.143 kb on + strand, within Pf6N2E2_1189 at 1393.190 kb on + strand at 1393.191 kb on - strand at 1393.191 kb on - strand at 1393.191 kb on - strand at 1393.191 kb on - strand at 1393.268 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.372 kb on + strand at 1393.373 kb on - strand at 1393.373 kb on - strand at 1393.373 kb on - strand at 1393.373 kb on - strand at 1393.393 kb on + strand at 1393.394 kb on - strand at 1393.468 kb on - strand, within Pf6N2E2_1190 at 1393.468 kb on - strand, within Pf6N2E2_1190 at 1393.486 kb on + strand, within Pf6N2E2_1190 at 1393.501 kb on + strand, within Pf6N2E2_1190 at 1393.501 kb on + strand, within Pf6N2E2_1190 at 1393.502 kb on - strand, within Pf6N2E2_1190 at 1393.502 kb on - strand, within Pf6N2E2_1190 at 1393.579 kb on + strand, within Pf6N2E2_1190 at 1393.579 kb on + strand, within Pf6N2E2_1190 at 1393.647 kb on + strand, within Pf6N2E2_1190 at 1393.666 kb on + strand, within Pf6N2E2_1190 at 1393.667 kb on - strand, within Pf6N2E2_1190 at 1393.667 kb on - strand, within Pf6N2E2_1190 at 1393.690 kb on + strand, within Pf6N2E2_1190 at 1393.691 kb on - strand, within Pf6N2E2_1190 at 1393.691 kb on - strand, within Pf6N2E2_1190 at 1393.828 kb on + strand, within Pf6N2E2_1190 at 1393.835 kb on - strand, within Pf6N2E2_1190 at 1393.844 kb on - strand, within Pf6N2E2_1190 at 1393.959 kb on + strand, within Pf6N2E2_1190 at 1393.960 kb on - strand, within Pf6N2E2_1190 at 1394.077 kb on + strand, within Pf6N2E2_1190 at 1394.080 kb on + strand, within Pf6N2E2_1190 at 1394.081 kb on - strand, within Pf6N2E2_1190 at 1394.086 kb on + strand, within Pf6N2E2_1190 at 1394.137 kb on + strand, within Pf6N2E2_1190 at 1394.150 kb on - strand, within Pf6N2E2_1190 at 1394.150 kb on - strand, within Pf6N2E2_1190
Per-strain Table
Position Strand Gene LocusTag Fraction Cerium(III) chloride 0.000195313 M remove 1,391,135 + Pf6N2E2_1187 0.89 -0.3 1,391,135 + Pf6N2E2_1187 0.89 -0.6 1,391,171 - +0.2 1,391,234 + -0.8 1,391,239 + -0.4 1,391,239 + -0.2 1,391,273 + +0.9 1,391,273 + -1.2 1,391,274 - +0.5 1,391,276 + +0.5 1,391,276 + +0.1 1,391,276 + +1.2 1,391,276 + -0.2 1,391,277 - -1.1 1,391,277 - +0.2 1,391,360 + +0.4 1,391,496 + Pf6N2E2_1188 0.25 -0.9 1,391,524 + Pf6N2E2_1188 0.28 +1.4 1,391,525 - Pf6N2E2_1188 0.28 +0.2 1,391,525 - Pf6N2E2_1188 0.28 +1.7 1,391,558 - Pf6N2E2_1188 0.32 +0.5 1,391,803 - Pf6N2E2_1188 0.61 +0.6 1,391,863 + Pf6N2E2_1188 0.68 -0.6 1,392,004 + Pf6N2E2_1188 0.84 -0.6 1,392,004 + Pf6N2E2_1188 0.84 +0.5 1,392,005 - Pf6N2E2_1188 0.84 +0.2 1,392,005 - Pf6N2E2_1188 0.84 -0.5 1,392,043 - Pf6N2E2_1188 0.89 +0.7 1,392,281 - Pf6N2E2_1189 0.13 -0.6 1,392,281 - Pf6N2E2_1189 0.13 -0.7 1,392,534 + Pf6N2E2_1189 0.34 +0.3 1,392,535 - Pf6N2E2_1189 0.35 -1.2 1,392,551 - Pf6N2E2_1189 0.36 -1.0 1,392,551 - Pf6N2E2_1189 0.36 -0.1 1,392,683 + Pf6N2E2_1189 0.47 +0.1 1,392,684 - Pf6N2E2_1189 0.47 +0.0 1,392,831 + Pf6N2E2_1189 0.60 -1.3 1,393,047 + Pf6N2E2_1189 0.78 -1.4 1,393,048 - Pf6N2E2_1189 0.78 -0.1 1,393,056 + Pf6N2E2_1189 0.79 +1.5 1,393,057 - Pf6N2E2_1189 0.79 +1.8 1,393,110 + Pf6N2E2_1189 0.84 -0.0 1,393,143 + Pf6N2E2_1189 0.86 -1.7 1,393,190 + +0.3 1,393,191 - -0.8 1,393,191 - +0.6 1,393,191 - +0.4 1,393,191 - +1.0 1,393,268 + -0.4 1,393,372 + +1.0 1,393,372 + +0.1 1,393,372 + -0.8 1,393,372 + +0.8 1,393,372 + -0.4 1,393,372 + -0.1 1,393,372 + +0.4 1,393,372 + -0.6 1,393,372 + -0.2 1,393,372 + -0.4 1,393,372 + -0.4 1,393,373 - +0.5 1,393,373 - +0.5 1,393,373 - -0.7 1,393,373 - +1.2 1,393,393 + +1.4 1,393,394 - -0.2 1,393,468 - Pf6N2E2_1190 0.17 +1.2 1,393,468 - Pf6N2E2_1190 0.17 +0.7 1,393,486 + Pf6N2E2_1190 0.18 -1.2 1,393,501 + Pf6N2E2_1190 0.20 -0.7 1,393,501 + Pf6N2E2_1190 0.20 -0.7 1,393,502 - Pf6N2E2_1190 0.20 +0.4 1,393,502 - Pf6N2E2_1190 0.20 +1.2 1,393,579 + Pf6N2E2_1190 0.28 -0.4 1,393,579 + Pf6N2E2_1190 0.28 -0.2 1,393,647 + Pf6N2E2_1190 0.34 +0.2 1,393,666 + Pf6N2E2_1190 0.36 +0.5 1,393,667 - Pf6N2E2_1190 0.36 +0.8 1,393,667 - Pf6N2E2_1190 0.36 +0.5 1,393,690 + Pf6N2E2_1190 0.39 -0.2 1,393,691 - Pf6N2E2_1190 0.39 +0.3 1,393,691 - Pf6N2E2_1190 0.39 -0.3 1,393,828 + Pf6N2E2_1190 0.52 -0.9 1,393,835 - Pf6N2E2_1190 0.53 -1.2 1,393,844 - Pf6N2E2_1190 0.54 +0.4 1,393,959 + Pf6N2E2_1190 0.66 -0.2 1,393,960 - Pf6N2E2_1190 0.66 -0.7 1,394,077 + Pf6N2E2_1190 0.77 -0.6 1,394,080 + Pf6N2E2_1190 0.78 -0.6 1,394,081 - Pf6N2E2_1190 0.78 +0.4 1,394,086 + Pf6N2E2_1190 0.78 -0.3 1,394,137 + Pf6N2E2_1190 0.83 +0.8 1,394,150 - Pf6N2E2_1190 0.85 +0.2 1,394,150 - Pf6N2E2_1190 0.85 +1.1
Or see this region's nucleotide sequence