Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05864

Experiment: Dodecandioic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05863 and H281DRAFT_05864 are separated by 237 nucleotidesH281DRAFT_05864 and H281DRAFT_05865 are separated by 114 nucleotides H281DRAFT_05863: H281DRAFT_05863 - 3-oxoacyl-[acyl-carrier protein] reductase, at 628 to 1,395 _05863 H281DRAFT_05864: H281DRAFT_05864 - Pimeloyl-ACP methyl ester carboxylesterase, at 1,633 to 2,427 _05864 H281DRAFT_05865: H281DRAFT_05865 - transcriptional regulator, LysR family, at 2,542 to 3,450 _05865 Position (kb) 1 2 3Strain fitness (log2 ratio) -1 0 1at 0.675 kb on - strandat 0.698 kb on + strandat 0.698 kb on + strandat 0.698 kb on + strandat 0.698 kb on + strandat 0.698 kb on + strandat 0.699 kb on - strandat 0.699 kb on - strandat 0.904 kb on + strand, within H281DRAFT_05863at 0.905 kb on - strand, within H281DRAFT_05863at 0.908 kb on + strand, within H281DRAFT_05863at 0.925 kb on + strand, within H281DRAFT_05863at 0.926 kb on - strand, within H281DRAFT_05863at 1.055 kb on + strand, within H281DRAFT_05863at 1.055 kb on + strand, within H281DRAFT_05863at 1.452 kb on + strandat 1.497 kb on - strandat 1.651 kb on + strandat 1.652 kb on - strandat 1.860 kb on + strand, within H281DRAFT_05864at 2.095 kb on + strand, within H281DRAFT_05864at 2.182 kb on + strand, within H281DRAFT_05864at 2.194 kb on + strandat 2.195 kb on - strand, within H281DRAFT_05864at 2.291 kb on + strand, within H281DRAFT_05864at 2.292 kb on - strandat 2.349 kb on - strandat 2.454 kb on - strandat 2.455 kb on + strandat 2.734 kb on + strand, within H281DRAFT_05865at 2.734 kb on + strand, within H281DRAFT_05865at 2.737 kb on + strand, within H281DRAFT_05865at 2.737 kb on + strand, within H281DRAFT_05865at 2.738 kb on - strand, within H281DRAFT_05865at 2.749 kb on - strand, within H281DRAFT_05865at 2.749 kb on - strand, within H281DRAFT_05865at 2.916 kb on - strand, within H281DRAFT_05865at 2.933 kb on - strand, within H281DRAFT_05865at 3.323 kb on - strand, within H281DRAFT_05865at 3.355 kb on + strand, within H281DRAFT_05865

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecandioic (C)
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675 - -0.1
698 + -0.3
698 + +0.4
698 + -0.4
698 + +1.3
698 + +0.4
699 - -0.1
699 - +1.2
904 + H281DRAFT_05863 0.36 +0.2
905 - H281DRAFT_05863 0.36 +0.0
908 + H281DRAFT_05863 0.36 +1.2
925 + H281DRAFT_05863 0.39 +0.5
926 - H281DRAFT_05863 0.39 -0.6
1,055 + H281DRAFT_05863 0.56 +0.2
1,055 + H281DRAFT_05863 0.56 +0.6
1,452 + +0.1
1,497 - +0.1
1,651 + -1.0
1,652 - +0.3
1,860 + H281DRAFT_05864 0.29 -0.0
2,095 + H281DRAFT_05864 0.58 +0.5
2,182 + H281DRAFT_05864 0.69 -0.4
2,194 + -0.2
2,195 - H281DRAFT_05864 0.71 +1.2
2,291 + H281DRAFT_05864 0.83 +1.7
2,292 - +1.6
2,349 - -0.3
2,454 - +0.2
2,455 + -0.7
2,734 + H281DRAFT_05865 0.21 +0.3
2,734 + H281DRAFT_05865 0.21 +0.6
2,737 + H281DRAFT_05865 0.21 -0.7
2,737 + H281DRAFT_05865 0.21 +0.9
2,738 - H281DRAFT_05865 0.22 +0.3
2,749 - H281DRAFT_05865 0.23 +0.1
2,749 - H281DRAFT_05865 0.23 +0.6
2,916 - H281DRAFT_05865 0.41 -0.3
2,933 - H281DRAFT_05865 0.43 +1.4
3,323 - H281DRAFT_05865 0.86 +0.1
3,355 + H281DRAFT_05865 0.89 +0.5

Or see this region's nucleotide sequence